Metadata completeness
How completely each curated field is populated across all 5605 datasets — an honest view of our coverage gaps, worst first, and a live to-do list for curation.
5605
datasets measured
<25% 25–50% 50–80% ≥80%
Biology
group avg 50%
Quality
group avg 57%
Measurement
group avg 66%
Provenance
group avg 66%
Sanity checks
Automatic plausibility checks on every dataset: counts a technology physically cannot produce, identical count matrices published twice, and values far outside what is typical for the technology. 144 of 5605 datasets are flagged — these are candidates for re-processing, not confirmed errors.
Observations per dataset
errorunusualphysical maximum
✕ error Exceeds physical maximum
92 datasets
- Human ovary
vluJ9YVisium5,067 obs > 4,992 spots - Human unknown
D4QusHVisium5,117 obs > 4,992 spots - Human skin of body
wUAOXpVisium5,195 obs > 4,992 spots - Human pancreas
ksG2clVisium5,207 obs > 4,992 spots - Human lung
gA0atNVisium5,218 obs > 4,992 spots - Human cheek
7YJ4bYVisium5,247 obs > 4,992 spots - Human pancreas
ZU5tPBVisium5,310 obs > 4,992 spots - Human pleura
z43yqpVisium5,351 obs > 4,992 spots - Human pancreas
s4DjZDVisium5,362 obs > 4,992 spots - Human lung
KI3j6VVisium5,388 obs > 4,992 spots - Rat brain
9e2psdVisium5,576 obs > 4,992 spots - Human brain
KZBDWMVisium5,705 obs > 4,992 spots - Human pancreas
m7WgMnVisium5,721 obs > 4,992 spots - Mouse brain
Z37jB4Visium5,990 obs > 4,992 spots - Rat brain
HLF2ASVisium6,080 obs > 4,992 spots - Human unknown
6zwW8IVisium6,085 obs > 4,992 spots - Human lymphoid tissue
14tImPVisium6,308 obs > 4,992 spots - Human pancreas
PGr0OeVisium6,421 obs > 4,992 spots - Human pancreas
knQwDtVisium6,641 obs > 4,992 spots - Human brain
6FDVMSVisium6,907 obs > 4,992 spots - Rat brain
csRGgcVisium7,036 obs > 4,992 spots - Human unknown
Pv02gjVisium7,086 obs > 4,992 spots - Mouse lung
of5ZuNVisium7,088 obs > 4,992 spots - Human unknown
VXkllOVisium7,181 obs > 4,992 spots - Human pancreas
CLG39wVisium7,208 obs > 4,992 spots - Human perianal skin
3y06ryVisium7,290 obs > 4,992 spots - Rat brain
bMoowNVisium7,451 obs > 4,992 spots - Human temporal cortex
BPEdyvVisium7,611 obs > 4,992 spots - Human unknown
K0xFTYVisium7,704 obs > 4,992 spots - Human unknown
qcgHtZVisium7,731 obs > 4,992 spots - Human pancreas
LuNPk2Visium7,898 obs > 4,992 spots - Human unknown
y0xsVxVisium7,931 obs > 4,992 spots - Human unknown
9A3II2Visium7,935 obs > 4,992 spots - Human brain
sqmtreVisium8,458 obs > 4,992 spots - Human unknown
B9FboHVisium8,546 obs > 4,992 spots - Human pancreas
phhmz9Visium8,739 obs > 4,992 spots - Human brain
tW3C6LVisium8,862 obs > 4,992 spots - Human lymphoid tissue
BYfgwxVisium9,020 obs > 4,992 spots - Human lymph node
60M3MXVisium9,158 obs > 4,992 spots - Human unknown
tYzZRMVisium9,181 obs > 4,992 spots - Human brain
hDvRYbVisium9,516 obs > 4,992 spots - Human pancreas
9eQCbjVisium9,534 obs > 4,992 spots - Human pancreas
XKMYEwVisium9,576 obs > 4,992 spots - Human lymphoid tissue
ZyvnFGVisium9,776 obs > 4,992 spots - Human unknown
7RqkzlVisium10,018 obs > 4,992 spots - Human brain
IQttSTVisium10,078 obs > 4,992 spots - Human temporal cortex
fMtJuxVisium10,187 obs > 4,992 spots - Human unknown
OWlfLNVisium10,347 obs > 4,992 spots - Human unknown
7961zUVisium10,497 obs > 4,992 spots - Human unknown
VcRizNVisium10,546 obs > 4,992 spots - Human pancreas
ElmPsYVisium10,742 obs > 4,992 spots - Human unknown
kW4jP4Visium10,752 obs > 4,992 spots - Human unknown
91sas3Visium10,770 obs > 4,992 spots - Human temporal cortex
kA7YJ7Visium11,002 obs > 4,992 spots - Human pancreas
HR84cMVisium11,180 obs > 4,992 spots - Human temporal cortex
727uUMVisium11,447 obs > 4,992 spots - Human unknown
qQTuvGVisium11,536 obs > 4,992 spots - Human temporal cortex
RC9PluVisium11,931 obs > 4,992 spots - Human temporal cortex
vCDSf1Visium12,011 obs > 4,992 spots - Human brain
1AuknaVisium12,242 obs > 4,992 spots - Human placenta
dUSAXfVisium12,267 obs > 4,992 spots - Human unknown
QDHfoIVisium12,388 obs > 4,992 spots - Human placenta
CBzxp4Visium12,410 obs > 4,992 spots - Human lymph node
5B9yVGVisium12,413 obs > 4,992 spots - Human unknown
OgtEOmVisium12,451 obs > 4,992 spots - Human perianal skin
Co6ckpVisium12,803 obs > 4,992 spots - Human temporal cortex
27etuxVisium12,985 obs > 4,992 spots - Human lung
B1pHBGVisium13,002 obs > 4,992 spots - Human temporal cortex
xV3KbtVisium13,079 obs > 4,992 spots - Human brain
86yq9ZVisium13,202 obs > 4,992 spots - Human temporal cortex
ibzHZnVisium13,235 obs > 4,992 spots - Human breast
nXCEnSVisium13,516 obs > 4,992 spots - Human unknown
p3RypBVisium13,594 obs > 4,992 spots - Human unknown
x9hFXKVisium13,601 obs > 4,992 spots - Human lymph node
Yo0HW4Visium13,713 obs > 4,992 spots - Mouse brain
DQ56sVVisium13,743 obs > 4,992 spots - Human temporal cortex
OS3UzbVisium13,770 obs > 4,992 spots - Human skin of body
lSOGq0Visium13,887 obs > 4,992 spots - Human lymphoid tissue
7yKJs5Visium13,945 obs > 4,992 spots - Mouse prostate gland
yD2xClVisium14,110 obs > 4,992 spots - Human skin of body
Pg7sR8Visium14,145 obs > 4,992 spots - Human skin of body
odo4iQVisium14,203 obs > 4,992 spots - Human skin of body
kFiU82Visium14,210 obs > 4,992 spots - Human skin of body
YwxIHGVisium14,328 obs > 4,992 spots - Human skin of body
FgT7gtVisium14,331 obs > 4,992 spots - Mouse prostate gland
23wPxSVisium14,332 obs > 4,992 spots - Human skin of body
1Haj9pVisium14,335 obs > 4,992 spots - Human skin of body
XGmw50Visium14,336 obs > 4,992 spots - Human pancreas
mEDsRsVisium14,400 obs > 14,336 spots - Human head of femur
6Qsv3uVisium14,400 obs > 14,336 spots - Human head of femur
qzSwmOVisium14,400 obs > 14,336 spots - Human head of femur
cg5E9tVisium14,400 obs > 14,336 spots
! unusual Unusual observations
42 datasets
- Mouse spinal cord
E7g91ospatial transcriptomics23 vs spatial transcriptomics median 286 - Mouse spinal cord
VbXnovspatial transcriptomics31 vs spatial transcriptomics median 286 - Mouse spinal cord
MYflpnspatial transcriptomics38 vs spatial transcriptomics median 286 - Mouse spinal cord
A7SBUyspatial transcriptomics42 vs spatial transcriptomics median 286 - Mouse spinal cord
iiCulPspatial transcriptomics52 vs spatial transcriptomics median 286 - Mouse spinal cord
9E7oVaspatial transcriptomics54 vs spatial transcriptomics median 286 - Human heart
RKziV4spatial transcriptomics55 vs spatial transcriptomics median 286 - Human heart
2U0HNespatial transcriptomics55 vs spatial transcriptomics median 286 - Mouse spinal cord
r8emknspatial transcriptomics57 vs spatial transcriptomics median 286 - Mouse spinal cord
yGRrwqspatial transcriptomics59 vs spatial transcriptomics median 286 - Human heart
zSRu1Xspatial transcriptomics59 vs spatial transcriptomics median 286 - Mouse spinal cord
OGJHdNspatial transcriptomics60 vs spatial transcriptomics median 286 - Mouse spinal cord
XmRcP8spatial transcriptomics62 vs spatial transcriptomics median 286 - Mouse spinal cord
A4JhOvspatial transcriptomics62 vs spatial transcriptomics median 286 - Human heart
z8MiNBspatial transcriptomics69 vs spatial transcriptomics median 286 - Human lymph node
kDVGDuVisium135 vs Visium median 2,860 - Human bile duct
lHf9HwVisium143 vs Visium median 2,860 - Human bile duct
fuHQbVVisium145 vs Visium median 2,860 - Human ilium
XX8RSeVisium150 vs Visium median 2,860 - Human ilium
T0OrKzVisium152 vs Visium median 2,860 - Human ilium
eR0PV3Visium159 vs Visium median 2,860 - Mouse trunk
h1okQyVisium178 vs Visium median 2,860 - Human ilium
TY567eVisium182 vs Visium median 2,860 - Human lymph node
VJep4eVisium191 vs Visium median 2,860 - Mouse trunk
EMS0unVisium192 vs Visium median 2,860 - Mouse trunk
x38XfjVisium198 vs Visium median 2,860 - Mouse uterus
3eD7K7Visium206 vs Visium median 2,860 - Mouse uterus
x5HVsNVisium207 vs Visium median 2,860 - Mouse uterus
wALMjzVisium213 vs Visium median 2,860 - Human skin of body
3kate4Visium215 vs Visium median 2,860 - Mouse trunk
lyqwdGVisium222 vs Visium median 2,860 - Human ilium
kdNzCzVisium228 vs Visium median 2,860 - Human intestine
lp2MACVisium229 vs Visium median 2,860 - Mouse parathyroid gland
7bq19TVisium230 vs Visium median 2,860 - Mouse heart
nA7EPYVisium243 vs Visium median 2,860 - Human skin of body
C49u2RVisium243 vs Visium median 2,860 - Human bile duct
2oIO0zVisium245 vs Visium median 2,860 - Mouse uterus
vhxyNkVisium257 vs Visium median 2,860 - Human skin of body
WN4NrJspatial transcriptomics1,182 vs spatial transcriptomics median 286 - Human basal ganglion
ypaUlpVizgen MERSCOPE13,596 vs Vizgen MERSCOPE median 54,899 - Mouse liver
tU1PnPVizgen MERSCOPE237,950 vs Vizgen MERSCOPE median 54,899 - Mouse liver
RcGzJcVizgen MERSCOPE243,863 vs Vizgen MERSCOPE median 54,899
! unusual Unusual sequencing depth
10 datasets
- Human ileum
PTwH3z10x Xenium5 counts/obs vs 10x Xenium median 147 - Human kidney
F5aA0q10x Xenium5 counts/obs vs 10x Xenium median 147 - Human rectum
kWoSOP10x Xenium3 counts/obs vs 10x Xenium median 147 - Human rectum
I11cgw10x Xenium6 counts/obs vs 10x Xenium median 147 - Human rectum
tktixJ10x Xenium4 counts/obs vs 10x Xenium median 147 - Human kidney
E5f35N10x Xenium4 counts/obs vs 10x Xenium median 147 - Human rectum
DKbkWp10x Xenium3 counts/obs vs 10x Xenium median 147 - Mouse intestine
UfOOEo10x Xenium1 counts/obs vs 10x Xenium median 147 - Mouse brain
ZXQXyQ10x Xenium3 counts/obs vs 10x Xenium median 147 - Mouse liver
VsMi5510x Xenium0 counts/obs vs 10x Xenium median 147