Visium
Human dorsolateral prefrontal cortex
GSM9223452
silver Interactive viewer schizophrenia No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9223452_Br5224-V13M06-342_A1_hires_image': DataArray[cyx] (3, 2000, 1881)
│ └── 'GSM9223452_Br5224-V13M06-342_A1_lowres_image': DataArray[cyx] (3, 600, 565)
├── Shapes
│ └── 'GSM9223452_Br5224-V13M06-342_A1': GeoDataFrame shape: (4992, 2) (2D shapes)
└── Tables
└── 'table': AnnData (4992, 36601)
with coordinate systems:
▸ 'GSM9223452_Br5224-V13M06-342_A1', with elements:
GSM9223452_Br5224-V13M06-342_A1_hires_image (Images), GSM9223452_Br5224-V13M06-342_A1_lowres_image (Images), GSM9223452_Br5224-V13M06-342_A1 (Shapes)
▸ 'GSM9223452_Br5224-V13M06-342_A1_downscaled_hires', with elements:
GSM9223452_Br5224-V13M06-342_A1_hires_image (Images), GSM9223452_Br5224-V13M06-342_A1 (Shapes)
▸ 'GSM9223452_Br5224-V13M06-342_A1_downscaled_lowres', with elements:
GSM9223452_Br5224-V13M06-342_A1_lowres_image (Images), GSM9223452_Br5224-V13M06-342_A1 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("4zLjqbme3Ao0R7FP") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/4zLjqbme3Ao0R7FP
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 4zLjqbme3Ao0R7FP Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["4zLjqbme3Ao0R7FP0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Visium]→ 62 datasets · replicates
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- dorsolateral prefrontal cortex
- Condition
- schizophrenia
- Modality
- RNA
- Observations
- 4,992
- Tier
- silver
- Chemistry
- Visium v1
- Size
- 38 MB
- Sample ID
- GSM9223452
- License
- unknown
- Published
- Feb 16, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB