Visium
Human ilium
GSM8618659
bronze Interactive viewer H&E Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM8618659_E53_03_29607_hires_image': DataArray[cyx] (3, 2000, 1998)
│ └── 'GSM8618659_E53_03_29607_lowres_image': DataArray[cyx] (3, 600, 600)
├── Shapes
│ └── 'GSM8618659_E53_03_29607': GeoDataFrame shape: (159, 2) (2D shapes)
└── Tables
└── 'table': AnnData (159, 36601)
with coordinate systems:
▸ 'GSM8618659_E53_03_29607', with elements:
GSM8618659_E53_03_29607_hires_image (Images), GSM8618659_E53_03_29607_lowres_image (Images), GSM8618659_E53_03_29607 (Shapes)
▸ 'GSM8618659_E53_03_29607_downscaled_hires', with elements:
GSM8618659_E53_03_29607_hires_image (Images), GSM8618659_E53_03_29607 (Shapes)
▸ 'GSM8618659_E53_03_29607_downscaled_lowres', with elements:
GSM8618659_E53_03_29607_lowres_image (Images), GSM8618659_E53_03_29607 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("eR0PV3zKuzSH1e6Z") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/eR0PV3zKuzSH1e6Z
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid eR0PV3zKuzSH1e6Z Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["eR0PV3zKuzSH1e6Z0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
single-cell multiomics data for the developing human pelvic girdle [spatial]→ 28 datasets · replicates
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- ilium
- Modality
- RNA
- Observations
- 159
- Tier
- bronze
- Chemistry
- Visium v1
- Magnification
- other
- Resolution
- 1,998 × 2,000 px
- mpp
- 3.277 µm/px
- Size
- 10 MB
- Sample ID
- GSM8618659
- License
- unknown
- Published
- Jul 4, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB