10x Xenium
Mouse spinal cord
GSM9829818
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataArray[cyx] (1, 34067, 51285)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (33794, 51203), (16897, 25601), (8448, 12800), (4224, 6400), (2112, 3200)
│ └── 'nucleus_labels': DataTree[yx] (33542, 51172), (16771, 25586), (8385, 12793), (4192, 6396), (2096, 3198)
├── Points
│ └── 'transcripts': DataFrame with shape: (25600878, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (78138, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (78138, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (77741, 2) (2D shapes)
└── Tables
└── 'table': AnnData (78138, 347)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("skZshCdz3fiP213j") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/skZshCdz3fiP213j
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid skZshCdz3fiP213j Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["skZshCdz3fiP213j0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis→ 10 datasets · comparison
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- spinal cord
- Modality
- RNA
- Observations
- 78,138
- Transcripts
- 25,600,878
- Tier
- silver
- Size
- 1.7 GB
- Sample ID
- GSM9829818
- License
- NCBI GEO policy
- Published
- Jul 28, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB