Visium
Zebra finch retina
GSM9266976
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'GSM9266976_28_28_filtered_feature_bc_matrix_full_image': DataTree[cyx] (4, 26981, 25492), (4, 13490, 12746), (4, 6745, 6373), (4, 3372, 3186), (4, 1686, 1593)
├── Shapes
│ └── 'GSM9266976_28_28_filtered_feature_bc_matrix': GeoDataFrame shape: (479, 2) (2D shapes)
└── Tables
└── 'table': AnnData (479, 16619)
with coordinate systems:
▸ 'GSM9266976_28_28_filtered_feature_bc_matrix', with elements:
GSM9266976_28_28_filtered_feature_bc_matrix_full_image (Images), GSM9266976_28_28_filtered_feature_bc_matrix (Shapes)
▸ 'GSM9266976_28_28_filtered_feature_bc_matrix_downscaled_hires', with elements:
GSM9266976_28_28_filtered_feature_bc_matrix (Shapes)
▸ 'GSM9266976_28_28_filtered_feature_bc_matrix_downscaled_lowres', with elements:
GSM9266976_28_28_filtered_feature_bc_matrix (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("g2No8bSDSv7DOHye") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/g2No8bSDSv7DOHye
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid g2No8bSDSv7DOHye Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["g2No8bSDSv7DOHye0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- Visium
- Organism
- zebra finch
- Tissue
- retina
- Modality
- RNA
- Observations
- 479
- Tier
- silver
- Chemistry
- Visium v1
- Size
- 1.0 GB
- Sample ID
- GSM9266976
- License
- unknown
- Published
- Nov 11, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB