10x Xenium
Human kidney
GSM9210735
bronze Interactive viewer anti-neutrophil cytoplasmic antibody-associated vasculitis Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 17117, 14329), (1, 8558, 7164), (1, 4279, 3582), (1, 2139, 1791), (1, 1069, 895)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (16909, 13920), (8454, 6960), (4227, 3480), (2113, 1740), (1056, 870)
│ └── 'nucleus_labels': DataTree[yx] (16455, 13874), (8227, 6937), (4113, 3468), (2056, 1734), (1028, 867)
├── Points
│ └── 'transcripts': DataFrame with shape: (1699616, 11) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (15441, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (15441, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (15354, 2) (2D shapes)
└── Tables
└── 'table': AnnData (15441, 480)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("cs64xX12ApOpSMOd") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/cs64xX12ApOpSMOd
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid cs64xX12ApOpSMOd Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["cs64xX12ApOpSMOd0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- kidney
- Condition
- anti-neutrophil cytoplasmic antibody-associated vasculitis
- Modality
- RNA
- Observations
- 15,441
- Transcripts
- 1,699,616
- Tier
- bronze
- Size
- 309 MB
- Sample ID
- GSM9210735
- License
- unknown
- Published
- May 5, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB