Visium
Mouse lung
GSM7454048
silver H&E pulmonary fibrosis No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM7454048_OldD28a_OldD28a_hires_image': DataArray[cyx] (3, 1982, 2000)
│ └── 'GSM7454048_OldD28a_OldD28a_lowres_image': DataArray[cyx] (3, 595, 600)
├── Shapes
│ └── 'GSM7454048_OldD28a_OldD28a': GeoDataFrame shape: (2383, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2383, 32285)
with coordinate systems:
▸ 'GSM7454048_OldD28a_OldD28a', with elements:
GSM7454048_OldD28a_OldD28a_hires_image (Images), GSM7454048_OldD28a_OldD28a_lowres_image (Images), GSM7454048_OldD28a_OldD28a (Shapes)
▸ 'GSM7454048_OldD28a_OldD28a_downscaled_hires', with elements:
GSM7454048_OldD28a_OldD28a_hires_image (Images), GSM7454048_OldD28a_OldD28a (Shapes)
▸ 'GSM7454048_OldD28a_OldD28a_downscaled_lowres', with elements:
GSM7454048_OldD28a_OldD28a_lowres_image (Images), GSM7454048_OldD28a_OldD28a (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("Bb2RKId3emziw9o9") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/Bb2RKId3emziw9o9
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid Bb2RKId3emziw9o9 Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["Bb2RKId3emziw9o90000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Spatial RNA sequencing of bleomycin-treated young and old mice lungs at day 14 and day 28 post injection→ 8 datasets · time course
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- lung
- Condition
- pulmonary fibrosis
- Modality
- RNA
- Observations
- 2,383
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 2,000 × 1,982 px
- mpp
- 3.449 µm/px
- Size
- 26 MB
- Sample ID
- GSM7454048
- License
- unknown
- Published
- Jun 30, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB