10x Xenium
Mouse brain
GSM9942074
silver Interactive viewer DiGeorge syndrome No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 51027, 48321), (1, 25513, 24160), (1, 12756, 12080), (1, 6378, 6040), (1, 3189, 3020)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (50977, 47608), (25488, 23804), (12744, 11902), (6372, 5951), (3186, 2975)
│ └── 'nucleus_labels': DataTree[yx] (50970, 47576), (25485, 23788), (12742, 11894), (6371, 5947), (3185, 2973)
├── Points
│ └── 'transcripts': DataFrame with shape: (111319792, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (217357, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (217357, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (218993, 2) (2D shapes)
└── Tables
└── 'table': AnnData (217357, 347)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("8IEMCupL7lHsw2mN") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/8IEMCupL7lHsw2mN
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 8IEMCupL7lHsw2mN Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["8IEMCupL7lHsw2mN0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- brain
- Condition
- DiGeorge syndrome
- Modality
- RNA
- Observations
- 217,357
- Transcripts
- 111,319,792
- Tier
- silver
- Size
- 3.7 GB
- Sample ID
- GSM9942074
- License
- unknown
- Published
- Aug 8, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB