Visium
Rat mammary gland
GSM8023904
bronze Interactive viewer breast carcinoma Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM8023904_6LD_hires_image': DataArray[cyx] (4, 468, 2000)
│ └── 'GSM8023904_6LD_lowres_image': DataArray[cyx] (4, 141, 600)
├── Shapes
│ └── 'GSM8023904_6LD': GeoDataFrame shape: (2898, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2898, 25399)
with coordinate systems:
▸ 'GSM8023904_6LD', with elements:
GSM8023904_6LD_hires_image (Images), GSM8023904_6LD_lowres_image (Images), GSM8023904_6LD (Shapes)
▸ 'GSM8023904_6LD_downscaled_hires', with elements:
GSM8023904_6LD_hires_image (Images), GSM8023904_6LD (Shapes)
▸ 'GSM8023904_6LD_downscaled_lowres', with elements:
GSM8023904_6LD_lowres_image (Images), GSM8023904_6LD (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("tZ54hGpvkY9cmHa3") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/tZ54hGpvkY9cmHa3
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid tZ54hGpvkY9cmHa3 Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["tZ54hGpvkY9cmHa30000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Deconvolution of regulatory T cell heterogeneity identifies cycling precursors as conductors of immune escape during breast carcinoma progression [Visium]→ 20 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- rat
- Tissue
- mammary gland
- Condition
- breast carcinoma
- Modality
- RNA
- Observations
- 2,898
- Tier
- bronze
- Chemistry
- Visium v1
- Size
- 12 MB
- Sample ID
- GSM8023904
- License
- unknown
- Published
- Feb 26, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB