Visium HD
Human bone element
GSM9555995
bronze Interactive viewer H&E Ewing sarcoma Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9555995_013_pre_hires_image': DataArray[cyx] (3, 1780, 6000)
│ └── 'GSM9555995_013_pre_lowres_image': DataArray[cyx] (3, 178, 600)
├── Shapes
│ ├── 'GSM9555995_013_pre_square_008um': GeoDataFrame shape: (71030, 1) (2D shapes)
│ └── 'GSM9555995_013_pre_square_008um_for_vitessce': GeoDataFrame shape: (71030, 2) (2D shapes)
└── Tables
└── 'square_008um': AnnData (71030, 18085)
with coordinate systems:
▸ 'GSM9555995_013_pre', with elements:
GSM9555995_013_pre_hires_image (Images), GSM9555995_013_pre_lowres_image (Images), GSM9555995_013_pre_square_008um (Shapes), GSM9555995_013_pre_square_008um_for_vitessce (Shapes)
▸ 'GSM9555995_013_pre_downscaled_hires', with elements:
GSM9555995_013_pre_hires_image (Images), GSM9555995_013_pre_square_008um (Shapes), GSM9555995_013_pre_square_008um_for_vitessce (Shapes)
▸ 'GSM9555995_013_pre_downscaled_lowres', with elements:
GSM9555995_013_pre_lowres_image (Images), GSM9555995_013_pre_square_008um (Shapes), GSM9555995_013_pre_square_008um_for_vitessce (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("yPR1tI6roL0bTJqN") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/yPR1tI6roL0bTJqN
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid yPR1tI6roL0bTJqN Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["yPR1tI6roL0bTJqN0001"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- Visium HD
- Organism
- human
- Tissue
- bone element
- Condition
- Ewing sarcoma
- Modality
- RNA
- Observations
- 71,030
- Tier
- bronze
- Resolution
- 6,000 × 1,780 px
- mpp
- 4.291 µm/px
- Size
- 88 MB
- Sample ID
- GSM9555995
- License
- unknown
- Published
- Mar 2, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB