10x Xenium
Human bone marrow
GSM9444340
silver Interactive viewer plasma cell myeloma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 20497, 31275), (1, 10248, 15637), (1, 5124, 7818), (1, 2562, 3909), (1, 1281, 1954)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (19964, 29596), (9982, 14798), (4991, 7399), (2495, 3699), (1247, 1849)
│ └── 'nucleus_labels': DataTree[yx] (19939, 29590), (9969, 14795), (4984, 7397), (2492, 3698), (1246, 1849)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (34408, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (34408, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (34532, 2) (2D shapes)
└── Tables
└── 'table': AnnData (34408, 477)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("p1UAUKdTNyf3kP3B") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/p1UAUKdTNyf3kP3B
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid p1UAUKdTNyf3kP3B Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["p1UAUKdTNyf3kP3B0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- bone marrow
- Condition
- plasma cell myeloma
- Modality
- RNA
- Observations
- 34,408
- Tier
- silver
- Size
- 637 MB
- Sample ID
- GSM9444340
- License
- unknown
- Published
- Oct 3, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB