10x Xenium
Mouse lung
GSM9360614
silver Interactive viewer lung cancer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataArray[cyx] (1, 57837, 51181)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (57666, 49132), (28833, 24566), (14416, 12283), (7208, 6141), (3604, 3070)
│ └── 'nucleus_labels': DataTree[yx] (57635, 49085), (28817, 24542), (14408, 12271), (7204, 6135), (3602, 3067)
├── Points
│ └── 'transcripts': DataFrame with shape: (140507917, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (517413, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (517413, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (517413, 2) (2D shapes)
└── Tables
└── 'table': AnnData (517413, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("BnzzeXw7fJigtKx3") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/BnzzeXw7fJigtKx3
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid BnzzeXw7fJigtKx3 Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["BnzzeXw7fJigtKx30000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
The Dichotomy of Tumor Control by Recruited and Resident Tumor-Associated Macrophages→ 4 datasets · comparison
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- lung
- Condition
- lung cancer
- Modality
- RNA
- Observations
- 517,413
- Transcripts
- 140,507,917
- Tier
- silver
- Size
- 6.3 GB
- Sample ID
- GSM9360614
- License
- NCBI GEO policy
- Published
- Dec 10, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB