10x Xenium
Mouse lung
GSM9511110
silver Interactive viewer colon adenocarcinoma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 51010, 48336), (1, 25505, 24168), (1, 12752, 12084), (1, 6376, 6042), (1, 3188, 3021)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (49749, 48276), (24874, 24138), (12437, 12069), (6218, 6034), (3109, 3017)
│ └── 'nucleus_labels': DataTree[yx] (49336, 48273), (24668, 24136), (12334, 12068), (6167, 6034), (3083, 3017)
├── Points
│ └── 'transcripts': DataFrame with shape: (12476334, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (352913, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (352913, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (352363, 2) (2D shapes)
└── Tables
└── 'table': AnnData (352913, 5028)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("1orPyVsew8YB4yUw") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/1orPyVsew8YB4yUw
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 1orPyVsew8YB4yUw Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["1orPyVsew8YB4yUw0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- lung
- Condition
- colon adenocarcinoma
- Modality
- RNA
- Observations
- 352,913
- Transcripts
- 12,476,334
- Tier
- silver
- Size
- 2.8 GB
- Sample ID
- GSM9511110
- License
- unknown
- Published
- Mar 17, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB