10x Xenium
Mouse brain
GSM9942076
silver Interactive viewer DiGeorge syndrome No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 54440, 48291), (1, 27220, 24145), (1, 13610, 12072), (1, 6805, 6036), (1, 3402, 3018)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (53912, 47829), (26956, 23914), (13478, 11957), (6739, 5978), (3369, 2989)
│ └── 'nucleus_labels': DataTree[yx] (53866, 47204), (26933, 23602), (13466, 11801), (6733, 5900), (3366, 2950)
├── Points
│ └── 'transcripts': DataFrame with shape: (44565350, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (195060, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (195060, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (196142, 2) (2D shapes)
└── Tables
└── 'table': AnnData (195060, 347)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("vpBESVg2DoVEUO0q") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/vpBESVg2DoVEUO0q
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid vpBESVg2DoVEUO0q Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["vpBESVg2DoVEUO0q0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- brain
- Condition
- DiGeorge syndrome
- Modality
- RNA
- Observations
- 195,060
- Transcripts
- 44,565,350
- Tier
- silver
- Size
- 2.7 GB
- Sample ID
- GSM9942076
- License
- unknown
- Published
- Aug 8, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB