10x Xenium
Golden hamster brain
GSM10002165
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataArray[cyx] (1, 112411, 54471)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (112376, 54403), (56188, 27201), (28094, 13600), (14047, 6800), (7023, 3400)
│ └── 'nucleus_labels': DataTree[yx] (112347, 54256), (56173, 27128), (28086, 13564), (14043, 6782), (7021, 3391)
├── Points
│ └── 'transcripts': DataFrame with shape: (87816366, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (510268, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (510268, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (502325, 2) (2D shapes)
└── Tables
└── 'table': AnnData (510268, 100)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("8fimVt6p8VBaoXlY") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/8fimVt6p8VBaoXlY
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 8fimVt6p8VBaoXlY Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["8fimVt6p8VBaoXlY0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
A single-nucleus and spatial transcriptomic atlas of the Syrian hamster preoptic area across hibernation states→ 4 datasets · other
Metadata
- Technology
- 10x Xenium
- Organism
- golden hamster
- Tissue
- brain
- Modality
- RNA
- Observations
- 510,268
- Transcripts
- 87,816,366
- Tier
- silver
- Size
- 8.9 GB
- Sample ID
- GSM10002165
- License
- NCBI GEO policy
- Published
- Sep 2, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB