Visium
Mouse entorhinal cortex
GSM10058090
silver Interactive viewer H&E No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'GSM10058090_Young1_s2_hires_image': DataArray[cyx] (3, 1993, 2000)
├── Shapes
│ └── 'GSM10058090_Young1_s2': GeoDataFrame shape: (3433, 2) (2D shapes)
└── Tables
└── 'table': AnnData (3433, 32285)
with coordinate systems:
▸ 'GSM10058090_Young1_s2', with elements:
GSM10058090_Young1_s2_hires_image (Images), GSM10058090_Young1_s2 (Shapes)
▸ 'GSM10058090_Young1_s2_downscaled_hires', with elements:
GSM10058090_Young1_s2_hires_image (Images), GSM10058090_Young1_s2 (Shapes)
▸ 'GSM10058090_Young1_s2_downscaled_lowres', with elements:
GSM10058090_Young1_s2 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("Ocaa34Zu1ieZ1cyq") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/Ocaa34Zu1ieZ1cyq
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid Ocaa34Zu1ieZ1cyq Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["Ocaa34Zu1ieZ1cyq0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Aging-Related Cellular and Molecular Changes Reveal a Role for Bglap3+ Neurons in MEC Spatial Cognition→ 14 datasets · other
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- entorhinal cortex
- Modality
- RNA
- Observations
- 3,433
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 2,000 × 1,993 px
- mpp
- 3.429 µm/px
- Size
- 59 MB
- Sample ID
- GSM10058090
- License
- unknown
- Published
- Sep 17, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB