Visium
Human breast
GSM10083688
silver Interactive viewer H&E ductal breast carcinoma in situ No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM10083688_ECIS12T_hires_image': DataArray[cyx] (3, 1974, 2000)
│ └── 'GSM10083688_ECIS12T_lowres_image': DataArray[cyx] (3, 592, 600)
├── Shapes
│ └── 'GSM10083688_ECIS12T': GeoDataFrame shape: (2800, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2800, 36601)
with coordinate systems:
▸ 'GSM10083688_ECIS12T', with elements:
GSM10083688_ECIS12T_hires_image (Images), GSM10083688_ECIS12T_lowres_image (Images), GSM10083688_ECIS12T (Shapes)
▸ 'GSM10083688_ECIS12T_downscaled_hires', with elements:
GSM10083688_ECIS12T_hires_image (Images), GSM10083688_ECIS12T (Shapes)
▸ 'GSM10083688_ECIS12T_downscaled_lowres', with elements:
GSM10083688_ECIS12T_lowres_image (Images), GSM10083688_ECIS12T (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("3lyzt5chZWC5xzqZ") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/3lyzt5chZWC5xzqZ
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 3lyzt5chZWC5xzqZ Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["3lyzt5chZWC5xzqZ0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
A single cell and spatial atlas of preinvasive breast cancer [Visium ST]→ 11 datasets · other
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- breast
- Condition
- ductal breast carcinoma in situ
- Modality
- RNA
- Observations
- 2,800
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 2,000 × 1,974 px
- mpp
- 3.418 µm/px
- Size
- 40 MB
- Sample ID
- GSM10083688
- License
- unknown
- Published
- Sep 29, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB