10x Xenium
Human lung
GSM9945417
silver Interactive viewer small cell lung carcinoma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 37457, 22805), (1, 18728, 11402), (1, 9364, 5701), (1, 4682, 2850), (1, 2341, 1425)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (35826, 21353), (17913, 10676), (8956, 5338), (4478, 2669), (2239, 1334)
│ └── 'nucleus_labels': DataTree[yx] (35262, 21347), (17631, 10673), (8815, 5336), (4407, 2668), (2203, 1334)
├── Points
│ └── 'transcripts': DataFrame with shape: (92574438, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (283748, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (283748, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (290049, 2) (2D shapes)
└── Tables
└── 'table': AnnData (283748, 5001)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("N8nWikD4YBkuv6uD") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/N8nWikD4YBkuv6uD
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid N8nWikD4YBkuv6uD Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["N8nWikD4YBkuv6uD0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- lung
- Condition
- small cell lung carcinoma
- Modality
- RNA
- Observations
- 283,748
- Transcripts
- 92,574,438
- Tier
- silver
- Size
- 3.2 GB
- Sample ID
- GSM9945417
- License
- unknown
- Published
- Aug 18, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB