Visium HD
Human breast
visium-hd-cytassist-11mm-human-breast-cancer-tma
silver Interactive viewer H&E breast cancer No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'Visium_HD_11mm_Human_Breast_Cancer_TMA_full_image': DataTree[cyx] (3, 70914, 114389), (3, 35457, 57194), (3, 17728, 28597), (3, 8864, 14298), (3, 4432, 7149)
│ ├── 'Visium_HD_11mm_Human_Breast_Cancer_TMA_hires_image': DataArray[cyx] (3, 3720, 6000)
│ └── 'Visium_HD_11mm_Human_Breast_Cancer_TMA_lowres_image': DataArray[cyx] (3, 372, 600)
├── Shapes
│ ├── 'Visium_HD_11mm_Human_Breast_Cancer_TMA_square_002um': GeoDataFrame shape: (6513244, 1) (2D shapes)
│ ├── 'Visium_HD_11mm_Human_Breast_Cancer_TMA_square_008um': GeoDataFrame shape: (415161, 1) (2D shapes)
│ ├── 'Visium_HD_11mm_Human_Breast_Cancer_TMA_square_016um': GeoDataFrame shape: (106682, 1) (2D shapes)
│ └── 'Visium_HD_11mm_Human_Breast_Cancer_TMA_square_016um_for_vitessce': GeoDataFrame shape: (106682, 2) (2D shapes)
└── Tables
├── 'square_002um': AnnData (6513244, 18085)
├── 'square_008um': AnnData (415161, 18085)
└── 'square_016um': AnnData (106682, 18085)
with coordinate systems:
▸ 'Visium_HD_11mm_Human_Breast_Cancer_TMA', with elements:
Visium_HD_11mm_Human_Breast_Cancer_TMA_full_image (Images), Visium_HD_11mm_Human_Breast_Cancer_TMA_hires_image (Images), Visium_HD_11mm_Human_Breast_Cancer_TMA_lowres_image (Images), Visium_HD_11mm_Human_Breast_Cancer_TMA_square_002um (Shapes), Visium_HD_11mm_Human_Breast_Cancer_TMA_square_008um (Shapes), Visium_HD_11mm_Human_Breast_Cancer_TMA_square_016um (Shapes), Visium_HD_11mm_Human_Breast_Cancer_TMA_square_016um_for_vitessce (Shapes)
▸ 'Visium_HD_11mm_Human_Breast_Cancer_TMA_downscaled_hires', with elements:
Visium_HD_11mm_Human_Breast_Cancer_TMA_hires_image (Images), Visium_HD_11mm_Human_Breast_Cancer_TMA_square_002um (Shapes), Visium_HD_11mm_Human_Breast_Cancer_TMA_square_008um (Shapes), Visium_HD_11mm_Human_Breast_Cancer_TMA_square_016um (Shapes), Visium_HD_11mm_Human_Breast_Cancer_TMA_square_016um_for_vitessce (Shapes)
▸ 'Visium_HD_11mm_Human_Breast_Cancer_TMA_downscaled_lowres', with elements:
Visium_HD_11mm_Human_Breast_Cancer_TMA_lowres_image (Images), Visium_HD_11mm_Human_Breast_Cancer_TMA_square_002um (Shapes), Visium_HD_11mm_Human_Breast_Cancer_TMA_square_008um (Shapes), Visium_HD_11mm_Human_Breast_Cancer_TMA_square_016um (Shapes), Visium_HD_11mm_Human_Breast_Cancer_TMA_square_016um_for_vitessce (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("UzxWwpO50keM16Cw") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/UzxWwpO50keM16Cw
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid UzxWwpO50keM16Cw Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["UzxWwpO50keM16Cw0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- Visium HD
- Organism
- human
- Tissue
- breast
- Condition
- breast cancer
- Modality
- RNA
- Observations
- 415,161
- Tier
- silver
- Chemistry
- Visium HD v1
- Magnification
- 40x
- Resolution
- 114,389 × 70,914 px
- mpp
- 0.274 µm/px
- Size
- 14 GB
- Sample ID
- visium-hd-cytassist-11mm-human-breast-cancer-tma
- License
- CC BY 4.0
- Published
- Apr 28, 2026
Cite this dataset
No linked publication found — please cite the data source: 10x Genomics ↗.
Source: 10x Genomics ↗ · License: CC BY 4.0 ↗ · Reprocessed to SpatialData by SpatialData-DB