Visium
Mouse pancreas
GSM8573643
silver Interactive viewer H&E malignant pancreatic neoplasm No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM8573643_926991_full_image': DataTree[cyx] (3, 3000, 3000), (3, 1500, 1500), (3, 750, 750), (3, 375, 375), (3, 187, 187)
│ ├── 'GSM8573643_926991_hires_image': DataArray[cyx] (3, 1632, 2000)
│ └── 'GSM8573643_926991_lowres_image': DataArray[cyx] (3, 490, 600)
├── Shapes
│ └── 'GSM8573643_926991': GeoDataFrame shape: (3306, 2) (2D shapes)
└── Tables
└── 'table': AnnData (3306, 19465)
with coordinate systems:
▸ 'GSM8573643_926991', with elements:
GSM8573643_926991_full_image (Images), GSM8573643_926991_hires_image (Images), GSM8573643_926991_lowres_image (Images), GSM8573643_926991 (Shapes)
▸ 'GSM8573643_926991_downscaled_hires', with elements:
GSM8573643_926991_hires_image (Images), GSM8573643_926991 (Shapes)
▸ 'GSM8573643_926991_downscaled_lowres', with elements:
GSM8573643_926991_lowres_image (Images), GSM8573643_926991 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("hHj864UxzZVcClwT") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/hHj864UxzZVcClwT
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid hHj864UxzZVcClwT Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["hHj864UxzZVcClwT0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Mapping the Evolution of Acinar cell derived Pancreatic Preneoplastic Lesions in a Mouse Model: A Detailed Transcriptomic and Pathological Characterization→ 5 datasets · other
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- pancreas
- Condition
- malignant pancreatic neoplasm
- Modality
- RNA
- Observations
- 3,306
- Tier
- silver
- Chemistry
- Visium CytAssist v2
- Resolution
- 2,000 × 1,632 px
- mpp
- 3.480 µm/px
- Size
- 65 MB
- Sample ID
- GSM8573643
- License
- NCBI GEO policy
- Published
- Mar 11, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB