Visium HD
Human kidney
GSM9467249
bronze Interactive viewer H&E type 2 diabetes mellitus Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9467249_patient1_hires_image': DataArray[cyx] (3, 6000, 5266)
│ └── 'GSM9467249_patient1_lowres_image': DataArray[cyx] (3, 600, 527)
├── Shapes
│ ├── 'GSM9467249_patient1_square_008um': GeoDataFrame shape: (154937, 1) (2D shapes)
│ └── 'GSM9467249_patient1_square_008um_for_vitessce': GeoDataFrame shape: (154937, 2) (2D shapes)
└── Tables
└── 'square_008um': AnnData (154937, 37082)
with coordinate systems:
▸ 'GSM9467249_patient1', with elements:
GSM9467249_patient1_hires_image (Images), GSM9467249_patient1_lowres_image (Images), GSM9467249_patient1_square_008um (Shapes), GSM9467249_patient1_square_008um_for_vitessce (Shapes)
▸ 'GSM9467249_patient1_downscaled_hires', with elements:
GSM9467249_patient1_hires_image (Images), GSM9467249_patient1_square_008um (Shapes), GSM9467249_patient1_square_008um_for_vitessce (Shapes)
▸ 'GSM9467249_patient1_downscaled_lowres', with elements:
GSM9467249_patient1_lowres_image (Images), GSM9467249_patient1_square_008um (Shapes), GSM9467249_patient1_square_008um_for_vitessce (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("bv10bJQZ5klI5nMu") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/bv10bJQZ5klI5nMu
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid bv10bJQZ5klI5nMu Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["bv10bJQZ5klI5nMu0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
HIF regulatory network reflects kidney disease progression in diabetes and reversal with SGLT2 inhibition→ 4 datasets · publication
Metadata
- Technology
- Visium HD
- Organism
- human
- Tissue
- kidney
- Condition
- type 2 diabetes mellitus
- Modality
- RNA
- Observations
- 154,937
- Tier
- bronze
- Magnification
- 20x
- Resolution
- 5,266 × 6,000 px
- mpp
- 0.549 µm/px
- Size
- 64 MB
- Sample ID
- GSM9467249
- License
- unknown
- Published
- Feb 5, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB