Visium
Human brain
GSM9886290
silver Interactive viewer H&E glioblastoma No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9886290_Visium_FF_NU01-01-124_NONSon_hires_image': DataArray[cyx] (3, 2000, 1952)
│ └── 'GSM9886290_Visium_FF_NU01-01-124_NONSon_lowres_image': DataArray[cyx] (3, 600, 586)
├── Shapes
│ └── 'GSM9886290_Visium_FF_NU01-01-124_NONSon': GeoDataFrame shape: (2318, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2318, 36601)
with coordinate systems:
▸ 'GSM9886290_Visium_FF_NU01-01-124_NONSon', with elements:
GSM9886290_Visium_FF_NU01-01-124_NONSon_hires_image (Images), GSM9886290_Visium_FF_NU01-01-124_NONSon_lowres_image (Images), GSM9886290_Visium_FF_NU01-01-124_NONSon (Shapes)
▸ 'GSM9886290_Visium_FF_NU01-01-124_NONSon_downscaled_hires', with elements:
GSM9886290_Visium_FF_NU01-01-124_NONSon_hires_image (Images), GSM9886290_Visium_FF_NU01-01-124_NONSon (Shapes)
▸ 'GSM9886290_Visium_FF_NU01-01-124_NONSon_downscaled_lowres', with elements:
GSM9886290_Visium_FF_NU01-01-124_NONSon_lowres_image (Images), GSM9886290_Visium_FF_NU01-01-124_NONSon (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("EP55XK5OKgP1prGq") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/EP55XK5OKgP1prGq
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid EP55XK5OKgP1prGq Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["EP55XK5OKgP1prGq0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Ultrasound-Mediated BBB Opening Promotes Microglial Reprogramming and Enhanced Endothelial Interactions in the Human Peritumoral Brain [Visium]→ 2 datasets · other
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- brain
- Condition
- glioblastoma
- Modality
- RNA
- Observations
- 2,318
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 1,952 × 2,000 px
- mpp
- 3.877 µm/px
- Size
- 14 MB
- Sample ID
- GSM9886290
- License
- unknown
- Published
- Oct 1, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB