Visium
Mouse lung
GSM9497187
bronze Interactive viewer H&E breast carcinoma Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9497187_PAN5774A4_hires_image': DataArray[cyx] (3, 1967, 2000)
│ └── 'GSM9497187_PAN5774A4_lowres_image': DataArray[cyx] (3, 590, 600)
├── Shapes
│ └── 'GSM9497187_PAN5774A4': GeoDataFrame shape: (1110, 2) (2D shapes)
└── Tables
└── 'table': AnnData (1110, 32285)
with coordinate systems:
▸ 'GSM9497187_PAN5774A4', with elements:
GSM9497187_PAN5774A4_hires_image (Images), GSM9497187_PAN5774A4_lowres_image (Images), GSM9497187_PAN5774A4 (Shapes)
▸ 'GSM9497187_PAN5774A4_downscaled_hires', with elements:
GSM9497187_PAN5774A4_hires_image (Images), GSM9497187_PAN5774A4 (Shapes)
▸ 'GSM9497187_PAN5774A4_downscaled_lowres', with elements:
GSM9497187_PAN5774A4_lowres_image (Images), GSM9497187_PAN5774A4 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("c6cDz8SKi1vy2KTZ") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/c6cDz8SKi1vy2KTZ
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid c6cDz8SKi1vy2KTZ Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["c6cDz8SKi1vy2KTZ0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Targeting the lipid metabolism proteins FASN and GPAM in alveolar type II cells decreases lung metastasis→ 2 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- lung
- Condition
- breast carcinoma
- Modality
- RNA
- Observations
- 1,110
- Tier
- bronze
- Chemistry
- Visium v1
- Resolution
- 2,000 × 1,967 px
- mpp
- 3.365 µm/px
- Size
- 20 MB
- Sample ID
- GSM9497187
- License
- unknown
- Published
- Feb 10, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB