10x Xenium
Leucoraja erinaceus trunk
GSM9901437
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 91766, 11582), (1, 45883, 5791), (1, 22941, 2895), (1, 11470, 1447), (1, 5735, 723)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (91691, 11444), (45845, 5722), (22922, 2861), (11461, 1430), (5730, 715)
│ └── 'nucleus_labels': DataTree[yx] (91666, 11435), (45833, 5717), (22916, 2858), (11458, 1429), (5729, 714)
├── Points
│ └── 'transcripts': DataFrame with shape: (28548789, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (137905, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (137905, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (138095, 2) (2D shapes)
└── Tables
└── 'table': AnnData (137905, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("knpiwujFTlCV6haf") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/knpiwujFTlCV6haf
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid knpiwujFTlCV6haf Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["knpiwujFTlCV6haf0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- leucoraja erinaceus
- Tissue
- trunk
- Modality
- RNA
- Observations
- 137,905
- Transcripts
- 28,548,789
- Tier
- silver
- Size
- 1.4 GB
- Sample ID
- GSM9901437
- License
- unknown
- Published
- Jul 28, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB