Visium HD
Human colon
visium-hd-human-colon-cancer-p5
silver Interactive viewer H&E colorectal cancer No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'Visium_HD_Human_Colon_Cancer_P5_full_image': DataTree[cyx] (3, 64370, 72897), (3, 32185, 36448), (3, 16092, 18224), (3, 8046, 9112), (3, 4023, 4556)
│ ├── 'Visium_HD_Human_Colon_Cancer_P5_hires_image': DataArray[cyx] (3, 5298, 6000)
│ └── 'Visium_HD_Human_Colon_Cancer_P5_lowres_image': DataArray[cyx] (3, 530, 600)
├── Shapes
│ ├── 'Visium_HD_Human_Colon_Cancer_P5_square_002um': GeoDataFrame shape: (8665632, 1) (2D shapes)
│ ├── 'Visium_HD_Human_Colon_Cancer_P5_square_008um': GeoDataFrame shape: (541968, 1) (2D shapes)
│ ├── 'Visium_HD_Human_Colon_Cancer_P5_square_016um': GeoDataFrame shape: (136035, 1) (2D shapes)
│ └── 'Visium_HD_Human_Colon_Cancer_P5_square_016um_for_vitessce': GeoDataFrame shape: (136035, 2) (2D shapes)
└── Tables
├── 'square_002um': AnnData (8665632, 18085)
├── 'square_008um': AnnData (541968, 18085)
└── 'square_016um': AnnData (136035, 18085)
with coordinate systems:
▸ 'Visium_HD_Human_Colon_Cancer_P5', with elements:
Visium_HD_Human_Colon_Cancer_P5_full_image (Images), Visium_HD_Human_Colon_Cancer_P5_hires_image (Images), Visium_HD_Human_Colon_Cancer_P5_lowres_image (Images), Visium_HD_Human_Colon_Cancer_P5_square_002um (Shapes), Visium_HD_Human_Colon_Cancer_P5_square_008um (Shapes), Visium_HD_Human_Colon_Cancer_P5_square_016um (Shapes), Visium_HD_Human_Colon_Cancer_P5_square_016um_for_vitessce (Shapes)
▸ 'Visium_HD_Human_Colon_Cancer_P5_downscaled_hires', with elements:
Visium_HD_Human_Colon_Cancer_P5_hires_image (Images), Visium_HD_Human_Colon_Cancer_P5_square_002um (Shapes), Visium_HD_Human_Colon_Cancer_P5_square_008um (Shapes), Visium_HD_Human_Colon_Cancer_P5_square_016um (Shapes), Visium_HD_Human_Colon_Cancer_P5_square_016um_for_vitessce (Shapes)
▸ 'Visium_HD_Human_Colon_Cancer_P5_downscaled_lowres', with elements:
Visium_HD_Human_Colon_Cancer_P5_lowres_image (Images), Visium_HD_Human_Colon_Cancer_P5_square_002um (Shapes), Visium_HD_Human_Colon_Cancer_P5_square_008um (Shapes), Visium_HD_Human_Colon_Cancer_P5_square_016um (Shapes), Visium_HD_Human_Colon_Cancer_P5_square_016um_for_vitessce (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("Jgv6kuRSBsaB5VNi") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/Jgv6kuRSBsaB5VNi
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid Jgv6kuRSBsaB5VNi Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["Jgv6kuRSBsaB5VNi0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- Visium HD
- Organism
- human
- Tissue
- colon
- Condition
- colorectal cancer
- Modality
- RNA
- Observations
- 541,968
- Tier
- silver
- Chemistry
- Visium HD v1
- Magnification
- 40x
- Resolution
- 72,897 × 64,370 px
- mpp
- 0.274 µm/px
- Size
- 13 GB
- Sample ID
- visium-hd-human-colon-cancer-p5
- License
- CC BY 4.0
- Published
- Aug 3, 2026
Cite this dataset
No linked publication found — please cite the data source: 10x Genomics ↗.
Source: 10x Genomics ↗ · License: CC BY 4.0 ↗ · Reprocessed to SpatialData by SpatialData-DB