10x Xenium
Human vestibulocochlear nerve
GSM10013105
silver Interactive viewer acoustic neuroma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 30741, 37001), (1, 15370, 18500), (1, 7685, 9250), (1, 3842, 4625), (1, 1921, 2312)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (28170, 36979), (14085, 18489), (7042, 9244), (3521, 4622), (1760, 2311)
│ └── 'nucleus_labels': DataTree[yx] (28148, 36964), (14074, 18482), (7037, 9241), (3518, 4620), (1759, 2310)
├── Points
│ └── 'transcripts': DataFrame with shape: (22521682, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (180115, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (180115, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (180183, 2) (2D shapes)
└── Tables
└── 'table': AnnData (180115, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("aCAExL5UhBpm8144") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/aCAExL5UhBpm8144
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid aCAExL5UhBpm8144 Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["aCAExL5UhBpm81440000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- vestibulocochlear nerve
- Condition
- acoustic neuroma
- Modality
- RNA
- Observations
- 180,115
- Transcripts
- 22,521,682
- Tier
- silver
- Size
- 1.7 GB
- Sample ID
- GSM10013105
- License
- unknown
- Published
- Sep 25, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB