Visium
Human ilium
GSM8618667
bronze Interactive viewer H&E Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM8618667_E72_IL_01_29538_hires_image': DataArray[cyx] (3, 2000, 1414)
│ └── 'GSM8618667_E72_IL_01_29538_lowres_image': DataArray[cyx] (3, 600, 424)
├── Shapes
│ └── 'GSM8618667_E72_IL_01_29538': GeoDataFrame shape: (2310, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2310, 36601)
with coordinate systems:
▸ 'GSM8618667_E72_IL_01_29538', with elements:
GSM8618667_E72_IL_01_29538_hires_image (Images), GSM8618667_E72_IL_01_29538_lowres_image (Images), GSM8618667_E72_IL_01_29538 (Shapes)
▸ 'GSM8618667_E72_IL_01_29538_downscaled_hires', with elements:
GSM8618667_E72_IL_01_29538_hires_image (Images), GSM8618667_E72_IL_01_29538 (Shapes)
▸ 'GSM8618667_E72_IL_01_29538_downscaled_lowres', with elements:
GSM8618667_E72_IL_01_29538_lowres_image (Images), GSM8618667_E72_IL_01_29538 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("sdDCfcTYXjRAFt8s") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/sdDCfcTYXjRAFt8s
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid sdDCfcTYXjRAFt8s Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["sdDCfcTYXjRAFt8s0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
single-cell multiomics data for the developing human pelvic girdle [spatial]→ 28 datasets · replicates
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- ilium
- Modality
- RNA
- Observations
- 2,310
- Tier
- bronze
- Chemistry
- Visium v1
- Magnification
- other
- Resolution
- 1,414 × 2,000 px
- mpp
- 5.765 µm/px
- Size
- 30 MB
- Sample ID
- GSM8618667
- License
- unknown
- Published
- Jul 4, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB