10x Xenium
Mouse spinal cord
GSM9829821
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataArray[cyx] (1, 112401, 54479)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (112323, 54468), (56161, 27234), (28080, 13617), (14040, 6808), (7020, 3404)
│ └── 'nucleus_labels': DataTree[yx] (112289, 54447), (56144, 27223), (28072, 13611), (14036, 6805), (7018, 3402)
├── Points
│ └── 'transcripts': DataFrame with shape: (180195353, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (591992, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (591992, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (592114, 2) (2D shapes)
└── Tables
└── 'table': AnnData (591992, 347)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("BBXhn9Vx3pEdRsly") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/BBXhn9Vx3pEdRsly
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid BBXhn9Vx3pEdRsly Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["BBXhn9Vx3pEdRsly0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis→ 10 datasets · comparison
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- spinal cord
- Modality
- RNA
- Observations
- 591,992
- Transcripts
- 180,195,353
- Tier
- silver
- Size
- 11 GB
- Sample ID
- GSM9829821
- License
- NCBI GEO policy
- Published
- Jul 28, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB