Visium
Zebra finch retina
GSM9266975
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'GSM9266975_27_27_filtered_feature_bc_matrix_full_image': DataTree[cyx] (4, 24698, 24823), (4, 12349, 12411), (4, 6174, 6205), (4, 3087, 3102), (4, 1543, 1551)
├── Shapes
│ └── 'GSM9266975_27_27_filtered_feature_bc_matrix': GeoDataFrame shape: (1109, 2) (2D shapes)
└── Tables
└── 'table': AnnData (1109, 16619)
with coordinate systems:
▸ 'GSM9266975_27_27_filtered_feature_bc_matrix', with elements:
GSM9266975_27_27_filtered_feature_bc_matrix_full_image (Images), GSM9266975_27_27_filtered_feature_bc_matrix (Shapes)
▸ 'GSM9266975_27_27_filtered_feature_bc_matrix_downscaled_hires', with elements:
GSM9266975_27_27_filtered_feature_bc_matrix (Shapes)
▸ 'GSM9266975_27_27_filtered_feature_bc_matrix_downscaled_lowres', with elements:
GSM9266975_27_27_filtered_feature_bc_matrix (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("hyD7gc2pLsXeEDlY") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/hyD7gc2pLsXeEDlY
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid hyD7gc2pLsXeEDlY Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["hyD7gc2pLsXeEDlY0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- Visium
- Organism
- zebra finch
- Tissue
- retina
- Modality
- RNA
- Observations
- 1,109
- Tier
- silver
- Chemistry
- Visium v1
- Size
- 1.0 GB
- Sample ID
- GSM9266975
- License
- unknown
- Published
- Nov 11, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB