Visium
Mouse pancreas
GSM8573642
silver Interactive viewer H&E malignant pancreatic neoplasm No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM8573642_926987_full_image': DataTree[cyx] (4, 3000, 3000), (4, 1500, 1500), (4, 750, 750), (4, 375, 375), (4, 187, 187)
│ ├── 'GSM8573642_926987_hires_image': DataArray[cyx] (3, 1278, 2000)
│ └── 'GSM8573642_926987_lowres_image': DataArray[cyx] (3, 383, 600)
├── Shapes
│ └── 'GSM8573642_926987': GeoDataFrame shape: (2673, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2673, 19465)
with coordinate systems:
▸ 'GSM8573642_926987', with elements:
GSM8573642_926987_full_image (Images), GSM8573642_926987_hires_image (Images), GSM8573642_926987_lowres_image (Images), GSM8573642_926987 (Shapes)
▸ 'GSM8573642_926987_downscaled_hires', with elements:
GSM8573642_926987_hires_image (Images), GSM8573642_926987 (Shapes)
▸ 'GSM8573642_926987_downscaled_lowres', with elements:
GSM8573642_926987_lowres_image (Images), GSM8573642_926987 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("agJFtF27S6aAcB76") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/agJFtF27S6aAcB76
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid agJFtF27S6aAcB76 Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["agJFtF27S6aAcB760000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Mapping the Evolution of Acinar cell derived Pancreatic Preneoplastic Lesions in a Mouse Model: A Detailed Transcriptomic and Pathological Characterization→ 5 datasets · other
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- pancreas
- Condition
- malignant pancreatic neoplasm
- Modality
- RNA
- Observations
- 2,673
- Tier
- silver
- Chemistry
- Visium CytAssist v2
- Resolution
- 2,000 × 1,278 px
- mpp
- 3.720 µm/px
- Size
- 60 MB
- Sample ID
- GSM8573642
- License
- NCBI GEO policy
- Published
- Mar 11, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB