Visium
Human unknown
GSM9980511
silver Interactive viewer H&E diffuse large B-cell lymphoma No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9980511_T08_T08_full_image': DataTree[cyx] (3, 3000, 3000), (3, 1500, 1500), (3, 750, 750), (3, 375, 375), (3, 187, 187)
│ ├── 'GSM9980511_T08_T08_hires_image': DataArray[cyx] (3, 3000, 3000)
│ └── 'GSM9980511_T08_T08_lowres_image': DataArray[cyx] (3, 600, 600)
├── Shapes
│ └── 'GSM9980511_T08_T08': GeoDataFrame shape: (10018, 2) (2D shapes)
└── Tables
└── 'table': AnnData (10018, 18085)
with coordinate systems:
▸ 'GSM9980511_T08_T08', with elements:
GSM9980511_T08_T08_full_image (Images), GSM9980511_T08_T08_hires_image (Images), GSM9980511_T08_T08_lowres_image (Images), GSM9980511_T08_T08 (Shapes)
▸ 'GSM9980511_T08_T08_downscaled_hires', with elements:
GSM9980511_T08_T08_hires_image (Images), GSM9980511_T08_T08 (Shapes)
▸ 'GSM9980511_T08_T08_downscaled_lowres', with elements:
GSM9980511_T08_T08_lowres_image (Images), GSM9980511_T08_T08 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("7Rqkzl99ybvsqWwO") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/7Rqkzl99ybvsqWwO
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 7Rqkzl99ybvsqWwO Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["7Rqkzl99ybvsqWwO0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment→ 32 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- unknown
- Condition
- diffuse large B-cell lymphoma
- Modality
- RNA
- Observations
- 10,018
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 3,000 × 3,000 px
- mpp
- 4.282 µm/px
- Size
- 265 MB
- Sample ID
- GSM9980511
- License
- unknown
- Published
- Sep 24, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB