10x Xenium
Leucoraja erinaceus trunk
GSM9901434
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 105333, 11794), (1, 52666, 5897), (1, 26333, 2948), (1, 13166, 1474), (1, 6583, 737)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (104086, 11528), (52043, 5764), (26021, 2882), (13010, 1441), (6505, 720)
│ └── 'nucleus_labels': DataTree[yx] (104082, 11526), (52041, 5763), (26020, 2881), (13010, 1440), (6505, 720)
├── Points
│ └── 'transcripts': DataFrame with shape: (34306506, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (193664, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (193664, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (193969, 2) (2D shapes)
└── Tables
└── 'table': AnnData (193664, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("7B2CZorCjLcgxotd") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/7B2CZorCjLcgxotd
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 7B2CZorCjLcgxotd Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["7B2CZorCjLcgxotd0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- leucoraja erinaceus
- Tissue
- trunk
- Modality
- RNA
- Observations
- 193,664
- Transcripts
- 34,306,506
- Tier
- silver
- Size
- 2.0 GB
- Sample ID
- GSM9901434
- License
- unknown
- Published
- Jul 28, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB