Visium HD
Human ovary
visium-hd-cytassist-11mm-human-ovarian-cancer-IF
silver Interactive viewer H&E ovarian cancer No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'Visium_HD_11mm_Human_Ovarian_Cancer_IF_full_image': DataTree[cyx] (4, 42149, 50671), (4, 21074, 25335), (4, 10537, 12667), (4, 5268, 6333), (4, 2634, 3166)
│ ├── 'Visium_HD_11mm_Human_Ovarian_Cancer_IF_hires_image': DataArray[cyx] (3, 4991, 6000)
│ └── 'Visium_HD_11mm_Human_Ovarian_Cancer_IF_lowres_image': DataArray[cyx] (3, 499, 600)
├── Shapes
│ ├── 'Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_002um': GeoDataFrame shape: (28120207, 1) (2D shapes)
│ ├── 'Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_008um': GeoDataFrame shape: (1762553, 1) (2D shapes)
│ ├── 'Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_016um': GeoDataFrame shape: (442750, 1) (2D shapes)
│ └── 'Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_016um_for_vitessce': GeoDataFrame shape: (442750, 2) (2D shapes)
└── Tables
├── 'square_002um': AnnData (28120207, 18085)
├── 'square_008um': AnnData (1762553, 18085)
└── 'square_016um': AnnData (442750, 18085)
with coordinate systems:
▸ 'Visium_HD_11mm_Human_Ovarian_Cancer_IF', with elements:
Visium_HD_11mm_Human_Ovarian_Cancer_IF_full_image (Images), Visium_HD_11mm_Human_Ovarian_Cancer_IF_hires_image (Images), Visium_HD_11mm_Human_Ovarian_Cancer_IF_lowres_image (Images), Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_002um (Shapes), Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_008um (Shapes), Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_016um (Shapes), Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_016um_for_vitessce (Shapes)
▸ 'Visium_HD_11mm_Human_Ovarian_Cancer_IF_downscaled_hires', with elements:
Visium_HD_11mm_Human_Ovarian_Cancer_IF_hires_image (Images), Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_002um (Shapes), Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_008um (Shapes), Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_016um (Shapes), Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_016um_for_vitessce (Shapes)
▸ 'Visium_HD_11mm_Human_Ovarian_Cancer_IF_downscaled_lowres', with elements:
Visium_HD_11mm_Human_Ovarian_Cancer_IF_lowres_image (Images), Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_002um (Shapes), Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_008um (Shapes), Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_016um (Shapes), Visium_HD_11mm_Human_Ovarian_Cancer_IF_square_016um_for_vitessce (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("0hNLKOrlFe39tBRr") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/0hNLKOrlFe39tBRr
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 0hNLKOrlFe39tBRr Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["0hNLKOrlFe39tBRr0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- Visium HD
- Organism
- human
- Tissue
- ovary
- Condition
- ovarian cancer
- Modality
- RNA
- Observations
- 1,762,553
- Tier
- silver
- Chemistry
- Visium HD v1
- Resolution
- 6,000 × 4,991 px
- mpp
- 2.743 µm/px
- Size
- 25 GB
- Sample ID
- visium-hd-cytassist-11mm-human-ovarian-cancer-IF
- License
- CC BY 4.0
- Published
- Apr 28, 2026
Cite this dataset
No linked publication found — please cite the data source: 10x Genomics ↗.
Source: 10x Genomics ↗ · License: CC BY 4.0 ↗ · Reprocessed to SpatialData by SpatialData-DB