Visium
Mouse entorhinal cortex
GSM10058096
silver H&E No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'GSM10058096_Young2_s4_hires_image': DataArray[cyx] (3, 1993, 2000)
├── Shapes
│ └── 'GSM10058096_Young2_s4': GeoDataFrame shape: (2678, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2678, 32285)
with coordinate systems:
▸ 'GSM10058096_Young2_s4', with elements:
GSM10058096_Young2_s4_hires_image (Images), GSM10058096_Young2_s4 (Shapes)
▸ 'GSM10058096_Young2_s4_downscaled_hires', with elements:
GSM10058096_Young2_s4_hires_image (Images), GSM10058096_Young2_s4 (Shapes)
▸ 'GSM10058096_Young2_s4_downscaled_lowres', with elements:
GSM10058096_Young2_s4 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("QMA7jKa95ejhvQSY") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/QMA7jKa95ejhvQSY
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid QMA7jKa95ejhvQSY Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["QMA7jKa95ejhvQSY0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Aging-Related Cellular and Molecular Changes Reveal a Role for Bglap3+ Neurons in MEC Spatial Cognition→ 14 datasets · other
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- entorhinal cortex
- Modality
- RNA
- Observations
- 2,678
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 2,000 × 1,993 px
- mpp
- 3.422 µm/px
- Size
- 63 MB
- Sample ID
- GSM10058096
- License
- unknown
- Published
- Sep 17, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB