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Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis302Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection150Overlapping yet distinct spatiomolecular profiles across mood disorders and biological sex in the human prefrontal cortex114In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics]108Integrating spatial gene expression and breast tumour morphology via deep learning84abc-hmba-merscope-h22.30.001-bg81Molecular Atlas of the Adult Mouse Brain75Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Visium]62Spatial transcriptomics landscape of non-communicable inflammatory skin diseases59Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer57Single cell and spatial transcriptomics highlight the interaction of club-like cells with immunosuppressive myeloid cells in prostate cancer52Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium]48The spatiotemporal dynamics of postnatal vascularization in the mouse brain46Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics]45Spatial transcriptomics of triple negative breast cancer43Impact of Alzheimer’s disease risk factors and local neuromelanin content on the transcriptomic landscape of the human locus coeruleus43COLON MAP: Colon Molecular Atlas Project41Spatially resolved multiomics of human cardiac niches41Spatial transcriptomics of high grade serous ovarian cancers38Spatial deconvolution of HER2-positive breast cancer delineates tumor-associated cell type interactions36Spatiotemporal organisation of residual disease in mouse and human BRCA1-deficient mammary tumors and breast cancer36Spatially resolved transcriptomic profiling of degraded35Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes35Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease34Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics34Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis32Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment32Spatial and single cell transcriptomics in the human Entorhinal Cortex across diverse risk of Alzheimer’s disease [Visium]31Assessment of Spatial Genomics for Oncology Discovery29single-cell multiomics data for the developing human pelvic girdle [spatial]28Decoding spatial gene activity changes in multiple sclerosis lesion progression26Spatial transcriptomic analysis of tumor heterogeneity in HPV+ and HPV- Head and Neck Squamous Cell Carcinoma26Spatial transcriptomic atlas of aggressive osteosarcomas reveals shared gene surface expression and immune landscape.26Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer24Prostate needle biopsies pre- and post-ADT: Count matrices, histological-, and Androgen receptor immunohistochemistry images24Mapping the Secondary Response to Traumatic Brain Injury Using Spatial Transcriptomics Shows Acute 4-aminopyridine Treatment Mitigates Axonal and Molecular Pathology24Spatially resolved clonal copy number alterations in benign and malignant tissueJus23Spatial localization with Spatial Transcriptomics for an atlas of healthy and injured cell states and niches in the human kidney [Visium ST]23Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma23Immune profiling-based targeting of pathogenic T cells with ustekinumab in ANCA-associated glomerulonephritis23Multiomic analysis uncovers a continuous spectrum of differentiation and Wnt-MDK-driven immune evasion in hepatoblastoma [Spatial Transcriptomics]22Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-1922Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium]22Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [Spatial Transcriptomics]22Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics]21Single-nucleus transcriptomic landscape of human glomerular diseases [Xenium]21Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain [spatial transcriptomics]21A spatially resolved atlas of the human lung characterizes a gland-associated immune niche20Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]20DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics]20Deconvolution of regulatory T cell heterogeneity identifies cycling precursors as conductors of immune escape during breast carcinoma progression [Visium]20Clonal biases dictate availability of colonic cancer driver mutations for transformation20A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart19Multimodal decoding of human liver regeneration [st_mouse]19Spatial Multimodal Analysis: MALDI-MSI and Spatial Transcriptomics within the same tissue section19Integrative spatial analysis reveals a multi-layered organization of glioblastoma19Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq]19Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium)19Spatial Multimodal Analysis: MALDI-MSI and Spatial Transcriptomics within the same tissue section18Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity18Spatial transcriptomics dataset of non-human primates18A Tissue Virus Microenvironment with Activated Stress Responses Underlies Durable SIV Persistence [Visium]18Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas17Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection17Single Cell and Spatial Analysis of Human Squamous Cell Carcinoma [ST]16The neurons that restore walking after paralysis [spatial transcriptomics]16Spatial heterogeneity of integrins and their ligands in primary breast tumors16A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression16A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP216Vascular invasion-associated gene expression is detectable in pre-surgical biopsies of stage I lung adenocarcinoma [Spatial Transcriptomics]16Distinct Molecular Patterns in R6/2 HD Mouse Brain: Insights from Spatiotemporal Transcriptomics [Spatial Transcriptomics]16Single-cell multi-omics reveal coordinated neoplastic and immune remodeling following KRAS inhibition [Spatial Transcriptomics]16Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus16Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Visium]16Spatial transcriptomics supports a role for SOX-4 driven signaling throughout the disease course of biliary atresia16SARS-CoV-2 Niches in Human Placenta Revealed by Spatial Transcriptomics15Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues15Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (spatial)15Spatial transcriptomics reveals modulation of transcriptional networks across brain regions after auditory threat conditioning15Blocking the Gut–Liver IgA Axis Attenuates Macrophage-Mediated Inflammation and Injury in Alcohol-Associated Liver Disease [Spatial Transcriptomics]15Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression14Charting the Heterogeneity of Colorectal Cancer Consensus Molecular Subtypes using Spatial Transcriptomics: datasets14Spatiotemporal transcriptome analysis reveals critical roles for mechano-sensing genes at the border zone in remodeling after myocardial infarction14Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes14Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury14Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples14Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells14Spatial transcriptomics unveils novel potential disease mechanisms associated with the microenvironment in Multiple Myeloma14CITEgeist: Cellular Indexing of Transcriptomes and Epitopes for Guided Exploration of Intrinsic Spatial Trends14Aging-Related Cellular and Molecular Changes Reveal a Role for Bglap3+ Neurons in MEC Spatial Cognition14Perturbed liver gene zonation in a mouse model of non-alcoholic steatohepatitis13Spatial Proteomics and Transcriptomics Reveal Early Immune Cell Organization in Pancreatic Intraepithelial Neoplasia13Eye-conic' spatial transcriptomics of keratoconus corneas1310x-xenium-ffpe-human-breast-biomarkers12spatialLIBD12INPP5D limits plaque formation and glial reactivity in the APP/PS1 mouse model of Alzheimer’s disease12Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment12Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response12Cell and Transcriptomic Diversity of Infrapatellar Fat Pad during Knee Osteoarthritis [Spatial Transcriptomics]12Safety and reactogenicity of a controlled human infection model of sand fly-transmitted cutaneous leishmaniasis12Cell state dynamics during early stages of serous endometrial carcinoma12INFLAMMATION-INDUCED SENESCENT-LIKE GLIA REWIRE CELLULAR NETWORKS IN MULTIPLE SCLEROSIS [Spatial transcriptomic]12IL-32 producing CD8+ memory T cells and Tregs define the IDO1 / PD-L1 niche in human cutaneous leishmaniasis skin lesions12In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics12Infusible Extracellular Matrix Biomaterial Enhances and Expedites Cell-Specific Pro-Repair Following Acute Myocardial Infarction12The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa12A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease12Spatial Transcriptomics of Human Fetal Lungs12A Phase II Trial of Pembrolizumab plus Granulocyte Macrophage Colony Stimulating Factor in Advanced Biliary Cancer [Spatial Transcriptomics]12Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases12Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium]12Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles12Spatial analysis reveals the evolving organization of IDH-mutant glioma12oliveira-2024-colorectal11Cancer-induced nerve injury promotes resistance to anti-PD-1 therapy [Spatial Transcriptomics]11Spatial gene expression and microenvironmental changes in the transition of nevus to melanoma11Rhythmic nephron formation in the developing kidney11Spatial multi-omics identifies rheumatoid arthritis synovial niches and de-novo laminar histological patterns of fibroblasts subtypes11A single cell and spatial atlas of preinvasive breast cancer [Visium ST]11geo-gse32264010geo-gse32264010abc-zhuang-abca-110abc-merfish-c57bl6j-63885010mousemodel_Heptablastoma spatial transcriptomics10Spatial transcriptomics of HIV-associated non-Hodgkin lymphomas by EBV status and cell of origin10Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus10Spatial Analysis of a Complete DIPG-Infiltrated Brainstem Reveals Novel Ligand-Receptor Mediators of Tumor-to-TME Crosstalk10Spatial transcriptomics and in situ immune cell profiling of the host ectocervical landscape of HIV infected Kenyan sex working women10Mapping Endothelial-Macrophage Interactions in Diabetic Vasculature: Role of TREM2 in Vascular Inflammation and Ischemic Response [Spatial Transcriptomics]10Spatial transcriptomics Reveals Impact of APOE4 Allele on α-Synuclein Aggregation and Cell-Cell Communication in Lewy Body Dementia10Spatial gene expression profiling of aortitis samples.10Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling10Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling10Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]10Activated Interferon Signaling Suppresses Age-Dependent Liver Cancer [MERFISH]10Spatial mapping of Ethiopian cutaneous leishmaniasis lesions reveals patient-defined immune signatures10Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis10Hepatocyte-macrophage crosstalk via the PGRN-EGFR axis modulates ADAR1-mediated immunity in the liver -Spatial Transcriptomics9Spatial transcriptomics analysis identifies a unique tumor-promoting function of the meningeal stroma in melanoma leptomeningeal disease.9Regional and Cell Specific Bioactivity of Injectable ECM Biomaterials in MI through Spatial and Single Nucleus Transcriptomics9An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus [spatial-visium]9Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma9Spatially resolved atlas of IPF fibroblastic foci identifies that PAK2 kinase activation is involved in fibrogenesis9Spatial transcriptomics of cellular niches in pulmonary granuloma of chronic sarcoidosis patients9Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease9Spatiotemporal Single-Cell Profiling Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease8Zika virus co-opts miRNA networks to persist in placental microenvironments detected by spatial transcriptomics [visium]8spatialRNAseq_heart_raw_suppdata8Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics8Visium Analysis of head and neck squamous carcinoma (HNSCC) spatial transcriptome evolution8Spatial transcriptomic profiling of the aging mouse brain [spatial scRNA-seq]8Spatial RNA-sequencing of day7 and day 21 post-LCMV Cl13 infection following transient CD4+ T cell depletion (Visium)8Multimodal human thymic profiling reveals trajectories and cellular milieu for T agonist selection [Spatial transcriptomics]8Spatial transcriptomics reveals ovarian cancer subclones with different microenvironments8In vivo macrophage engineering reshapes the tumor microenvironment leading to eradication of liver metastases [Visium]8Conserved transcriptional connectivity of regulatory T cells in the tumor microenvironment informs novel combination cancer therapy strategies [visium]8Defining the spatial-molecular map of fibrotic tendon healing and the drivers of Scleraxis-lineage cell fate and function8Spatial RNA sequencing of bleomycin-treated young and old mice lungs at day 14 and day 28 post injection8Spatial transcriptomics in embryonic mouse diaphragm muscle reveals regional gradients and subdomains of developmental gene expression8Neuromodulatory co-expression in cardiac vagal motor neurons of the Dorsal Motor Nucleus of the Vagus [spatial transcriptomics]8Histological Signatures Reveal Anti-Fibrotic Factors in Mouse and Human Lungs [Visium]8Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset3]8Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer8Pericytes orchestrate a tumor-restraining microenvironment in glioblastoma [Spatial Transcriptomics]8CH6824025, potent and selective DDR1 inhibitor, reduces kidney fibrosis in UUO mice8Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages8Integrated Methylation and Spatial Transcriptomic Profiling of Metaplastic Breast Cancer to Investigate Intra-tumoral Heterogeneity.8Cellular cartography reveals mouse prostate organization and determinants of castration resistance [Spatial Transcriptomics]8Integrated single-cell and spatial analysis identifies context-dependent myeloid-T cell interactions in head and neck cancer immune checkpoint blockade response8Spatial transcriptomics for high-grade serous ovarian carcinoma who were treated with Olaparib maintenance therapy8A spatiotemporal atlas of orchiectomy-induced modulation of cellular composition and gene expression in the mouse prostate8Spatial Transcriptomics Reveals Local Subtype-Specific Identity and Signaling within Multifocal Small Intestinal Neuroendocrine Tumors8Eosinophils Orchestrate Intestinal Remodeling and Promote Innate Defense During Reproduction8Spatial Transcriptomic Analysis of Mouse Parathyroid Gland Cells Expressing an Activating Variant of Gcm28Spatial transcriptomics unveils estrogen-modulated immune responses and structural alterations in the ectocervical mucosa of depot medroxyprogesterone acetate users8Spatial transcriptomic profiling of the human aortic valve reveals cellular sex differences near sites of calcification8Single-cell-scale spatial transcriptome of the developing and adult mouse ovary8Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses8Spatial Transcriptomic Mapping of Postnatal Mouse Uterine Development8Spatial Transcriptomics Reveals Compartment-Specific Cytotoxic T cells Crosstalk with AT2 and Goblet cells in Advanced COPD8Pericyte KATP Channel Hyperactivity Redistributes Cortical Blood Flow in a CADASIL Mouse Model8A Spatial Transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease7Spatial Total RNA-Sequencing of regenerating mouse hindlimb muscle and Type 1-Lang reovirus-infected mouse heart7Spatial transcriptome analysis defines heme as a hemopexin-targetable inflammatoxin in the brain7Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture7Integrative single-cell transcriptome analysis of human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis [Spatial]7Seeing the whole transcriptomics picture: Spatial gene expression analysis reveals photoreceptor stress as modulator of retinal vascular changes7Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases7Spatiotemporal dynamics of the cardioimmune niche during lesion repair [spatial]7Spatial Transcriptomic Profiling of the Type 2 Diabetic Coronary Microcirculation Reveals Heterogeneity Varied by Regions of the Heart [Visium]7Ontogeny-independent expression of LPCAT2 in granuloma macrophages during experimental visceral leishmaniasis [Spatial Transcriptomics]7Single cell approaches define the murine leptomeninges:cortical brain interface as a distinct cellular neighborhood comprised of neural and nonneural cell types7Identification of a long-term surviving human mesenchymal stromal cell subpopulation upon intradermal injection in immunodeficient mice7Phenylalanine Reprograms TLS Maturation and Plasma cell differentiation in MASH-HCC [Spatial Transcriptomics]7Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer.7Accelerated cerebromicrovascular senescence contributes to cognitive decline in a mouse model of paclitaxel (Taxol)-induced chemobrain [Spatial Transcriptomics]7Spatial transcriptomics of the mouse brain across three age groups6Neuroinflammatory astrocyte subtypes in the mouse brain [Visium]6Spatial transcriptomics of human brain metastases6Spatial sequencing of young and aged lungs following influenza A virus infection6Spatial epigenome-transcriptome co-profiling of mammalian tissues6Comparison of the Illumina NextSeq 2000 and GeneMind Genolab M sequencing platforms for spatial transcriptomics6The transcription factor Zfp281 serves redundantly with Zfp148 to support CD4+ T cell development and functions [Thymus Visium]6Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Visium]6Recirculating regulatory T cells mediate thymic regeneration [visium]6Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics]6Single-nucleus and spatial transcriptomics of human ovary: Molecular insights into signaling pathways underlying primary ovarian insufficiency in classic galactosemia [Spatial transcriptomics]6High resolution mapping of erythroid niches in mice using subcellular spatial transcriptomics6Hif2α–Lox mediated collagen remodelling is crucial for embryo invasion6Single-Cell and Spatial Multi-omics Reveal Interferon Signaling in the Pathogenesis of Perianal Fistulizing Crohn’s Disease6In situ targeted gene expression analysis of healing skin on SD0 post-wounding in Wildtype and Rnasel knock out wounds6Integrative Spatial Multi-Omics Reveal Niche-Specific Inflammatory Signaling and Differentiation Hierarchies in Acute Myeloid Leukemia6Spatial Gene Expression of Human Coronary Arteries Revealed the Molecular Features of Diffuse Intimal Thickening in Explanted Hearts6A skeletal muscle atlas shows neuromuscular junction adaptations to growth and atrophy6HMG Box-Containing Protein 1 (HBP1) Protects Against Pancreatic Injury in Acute Pancreatitis but Promotes Neoplastic Progression6Unveiling Transcriptional Heterogeneity and Discovering Footprints in Pediatric Medulloblastoma via Spatial RNA-Seq and Machine Learning6Spatial transcriptomic profiling of human saphenous vein grafts reveals molecular remodeling and smooth muscle cell phenotypic transition during early neointima proliferation6Neoadjuvant modified FOLFIRINOX plus nivolumab in borderline-resectable pancreatic ductal adenocarcinoma: a pilot phase 1 trial6Reprogramming engineered autologous T cells to overcome resistance in patients with Merkel cell carcinoma [Xenium]6Spatial transcriptomics of bone taken from two PRF1-/- B16F10-injected and one PRF1-/- healthy control- bone tissues using Xenium6Custom Probe-Based Spatial Transcriptomics Enables Microbiome Detection in FFPE Colorectal Cancer Tissue6Spatial transcriptomic dissection of intratumoral heterogeneity and microenvironment in sinonasal and skull base adenoid cystic carcinoma6Visium CytAssist Gene Expression of Post-Xenium vs Control5geo-gse3427385geo-gse3427385Ex-ST5GENE EXPRESSION WITHIN A HUMAN CHOROIDAL NEOVASCULAR MEMBRANE USING SPATIAL TRANSCRIPTOMICS5Spatially resolved transcriptomic analysis of acute kidney injury in a female murine model5mousemodel_Heptablastoma spatial transcriptomics5Time-series spatial transcriptomic analysis of murine colon undergoing AOM-DSS tumorigenesis with and without LXR activation5Patient-derived lymphomoids preserve the tumor architecture and allow testing response to therapies in lymphoma [Spatial Transcriptomics]5Spatial transcriptomics on treatment-naïve pancreatic ductal adenocarcinoma (PDAC) patients5Multi-omic analysis reveals retinoic acid molecular drivers for fibrosis and regenerative repair in skin fibrosis [Spatial transcriptomics]5Mapping the Evolution of Acinar cell derived Pancreatic Preneoplastic Lesions in a Mouse Model: A Detailed Transcriptomic and Pathological Characterization5Deciphering head and neck cancer microenvironment: Single‐cell and spatial transcriptomics reveals human papillomavirus‐associated differences5Collagen Alignment and Spatial Transcriptomics Analysis (CASTA) reveals gene programs associated with collagen alignmet in colorectal cancer5Prostate ST Internal5Distinct IL‑17A and retinoic acid–associated gene programs are enriched in epithelialized tunnels in severe hidradenitis suppurativa.5A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration in the Jejunum4Spatiotemporally Deciphering the Unknown Role of Persistent HPV Infection in Precancer to Cervical Cancer Progression: Integrating Single-Cell RNA-Sequencing Landscape and Spatial Transcriptomics Atlas [Spatial Transcriptomics]4A novel model of binge ethanol exposure reveals enhanced neurodegeneration with advanced age4Single cell profiling of primary and paired metastatic lymph node tumors in breast cancer patients4Schwann Cells Shape Tumor Cells and Cancer-Associated Fibroblasts in the Pancreatic Ductal Adenocarcinoma Microenvironment [ST]4Human ileum, Visium4Visium spatial transcriptomics analysis of lacrimal gland during chronic inflammation progression.4Single Cell and Spatial Analysis of Human Squamous Cell Carcinoma [ST]4Single cell- Cluster-RNA seq and Spatial Transcriptomics from the trunk of mouse embryos of different genotypes (wild type, Pax2-GFP, Pax2-GFP; Gata3 knockout) and developmental stages (E8.75, E9.5, E11.5) [Spatial Transcriptomics]4Spatial transcriptomics reveals a role for sensory nerves in preserving cranial suture patency through modulation of BMP/TGFβ signaling4Integrated spatial multi-omics reveals fibroblast fate during tissue repair4Spatial transcriptomics of the ageing ovary4Characterizing Neonatal Heart Maturation, Regeneration, and Scar Resolution Using Spatial Transcriptomics [spatial]4Single cell profiling of primary and paired metastatic lymph node tumors in breast cancer patients (10x Visium)4Perturb-map coupled with spatial transcriptomics identifies mutation associated gene signatures in a mouse model of lung adenocarcinoma4Spatial Transcriptomics of Joint-Draining Popliteal Lymph Nodes from Wild-type and TNF-Tg Mice with Early and Advanced Inflammatory-Erosive Arthritis4Spatial transcriptomics (Visium, 10x Genomics) data of Duchenne mouse models4Spatiotemporal signaling underlies progressive vascular rarefaction in myocardial infarction4scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice4Spatial transcriptomic profiling of Patient and Patient-corrected bioengineered vascular grafts.4Liver metastases originating from 4 colorectal cancer patients (CRC-LM).4Insulin-like growth factor I reduces coronary atherosclerosis in pigs with familial hypercholesterolemia4Spatial Multi-omics Reveals the Heterogeneity of Tumor Microenvironment in the OSF-Associated OSCC4PREGNANCY-RESPONSIVE POOLS OF ADULT NEURAL STEM CELLS FOR TRANSIENT NEUROGENESIS IN MOTHERS4Visium Spatial transcriptomics analysis of human primary colorectal cancer4Time-series spatial transcriptomic analysis of murine small intestine (SI) undergoing irradiation induced injury-repair with and without LXR activation4Molecular reframing of fibroblasts during resolution of arthritis [Visium]4Orthotopic 4T1 tumors spatial transcriptomics4In vivo single-cell CRISPR uncovers distinct TNF-α programs in tumor evolution4Nextflow Pipeline for Visium and H&E Data from Patient-Derived Xenograft Samples4Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver4Spatial transcriptomics map of the embryonic mouse brain: a tool to explore neurogenesis4Cancer-associated Fibroblast Spatial Heterogeneity and EMILIN1 Expression in Cancer Stroma Modulate TGF-b Activity and CD8+ T-Cell Infiltration in Breast Cancer4Spatial transcriptome analysis for squamous cell carcinoma arising from mature teratoma4Spatial transcriptomics of the achilles tendon harvested from the injury site with and without TrkA neuronal inhibition4Spatial microniches of IL-2 synergize with IL-10 to drive lung migratory Th2 cells in response to inhaled allergen [Spatial transcriptomics]4Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver4Systems-based identification of the Hippo pathway for promoting fibrotic mesenchymal differentiation in systemic sclerosis4Role of copper in progression of clear cell renal cell carcinoma [Spatial transcriptomics]4Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [Spatial Transcriptomics]4Dynamic fibroblast-immune interactions shape recovery after brain injury [Visium]4Comparing 10x Visium spatial transcriptomic technologies4Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis4Spatial transcriptomic sequencing data of human small cell lung cancer4Consequences of the perivascular niche remodeling for tumoricidal T-cell trafficking into metastasis of ovarian cancer [Spatial Transciptomics]410X Visium Spatial transcriptomics of murine small intestine 6 and 14 days post Heligmosomoides polygyrus infection with or without LXR agonist GW39654Host-Pathogen Interactions in the Plasmodium-Infected Mouse Liver at Spatial and Single-Cell Resolution (VISIUM)4Spatial characterization of the transcriptome of the adult healthy and mutant FUS mouse spinal cords [Spatial transcriptomics]4Multi-omics Analysis Revealing the Impact of Excessive Maternal Folate Supplementation on Offspring Brain Development [spatial transcriptome]4Tau accumulation induces microglial state alterations in Alzheimer’s disease model mice (Spatial Transcriptomics)4Lgr5 Marks Stem/Progenitor Cells Contributing to Epithelial and Muscle Development in the Mouse Esophagus4Mid-Lobular Hepatocytes Exhibit Transient Proliferation Pause and Stress Response through Atf4-Ddit3 axis in Early Acute Liver Injury (10x Visium)4The roles of glioma-associated macrophages/microglia in human GBM4Extraction of a Stromal Metastatic Gene Signature in Breast Cancer via Spatial Profiling4Mapping the genetic landscape establishing a tumor immune microenvironment favorable for anti-PD-1 response in mice and humans (Visium).4Differential Activity of MAPK signalling Defines Fibroblast Subtypes in Pancreatic Cancer (Spatial Transcriptomics)4Effects of inhibiting stearoyl-CoA desaturase (SCD) on the spatial transcriptome in a mouse model of Alzheimer's disease (AD)4Single cell deletion of the transcription factors Sox9 and Trps1 reveals novel functions in adult cortical astrocytes [Spatial transcriptomics]4Reprogramming of epidermal keratinocytes by PITX1 transforms the cutaneous cellular landscape and promotes wound healing [Xenium]4Spatial component of: CELSR3 deficiency leads to tic-related behaviors and dopaminergic alterations in the striatum4FOXA1 loss drives basal/squamous de-differentiation of prostate cancer and induces an immunosuppressive tumor microenvironment4CDK12/13 inactivation triggers STING-mediated antitumor immunity in preclinical models4Spatial transcriptomics of the human first trimester decidua4Spatially resolved chimeric analysis reveals extracellular CKB-mediated ATP uptake at the glioma-astrocyte invasive front4Fibroblast-Derived Thrombospondin 2 Shapes the Immune-Exclusionary Environment at Invasive Fronts in Colorectal Cancer [Visium4Gas6-Axl signaling drives oral regenerative wound repair4Mouse uterine gene expressions during decidual processes [Visium]4Breast Cancer Remodels Lymphatics in Sentinel Lymph Nodes4Defining Cellular Diversity at the Swine Maternal-Fetal Interface Using Spatial Transcriptomics and Organoids [MFI017_Visium]4Inhibition of ACLY enhances tumor immunogenicity and resolves MASH-driven HCC4Spatial transcriptomics and scRNA-sequencing on gastrocnemius muscle form B6-mdx and D2-mdx mice4Molecular pathology of acute spinal cord injury in middle-aged mice4Spatial transcriptomic profiling of seborrhoeic keratoses4Spatial tumour-immune ecosystems shape the efficacy of anti-PD1 immunotherapy in primary cutaneous melanoma [Spatial Transcriptomics]4Dysmorphic neurons express markers of inhibitory glycinergic signaling in focal cortical dysplasia44R-Tau Seeding Activity Reveals Molecular Subtypes in Progressive Supranuclear Palsy4Spatial transcriptional features of MYCN niche in liver tumorigenesis.4Single-cell and spatial transcriptomic analyses of gene therapy-associated retinal inflammation in non-human primates4Intercellular signaling and synaptic deconstruction uncovered by single-cell and spatial transcriptomics in an AD tauopathy model4Comparative Eye Transcriptome Atlas4Translational profiling of ET-insensitive cell populations in ER+ breast cancer reveals new therapeutic vulnerabilities4The Dichotomy of Tumor Control by Recruited and Resident Tumor-Associated Macrophages4Single Cell and Spatial Transcriptomics Identify Novel Immune-Stromal Interactions in Cardiac Allograft Vasculopathy4HIF regulatory network reflects kidney disease progression in diabetes and reversal with SGLT2 inhibition4Single cell and spatial sequencing analysis of cancer associated fibroblasts in the brain metastasis tumor microenvironment4Spatial Transcriptomics Analysis of inflamed versus healthy Dental Pulps4Single-cell and Spatial Transcriptomic Profiling of the Bone Metastatic Microenvironment4TREM2⁺ macrophages from distinct origins mediate compartment-specific protection in diabetic kidney disease [Spatial Transcriptomics]4Spatial transcriptomic analysis of mouse liver in a high-fat diet model with kimchi supplementation4Spatial transcriptomic profiling of human pancreatic ductal adenocarcinoma using 10x Genomics Visium platform4Cellular Signatures of Melanocortin Pathway Genes Across the Locus Coeruleus [Spatial Transcriptomics]4Glioma-intrinsic MAPK/ERK signaling promotes immunotherapy efficacy through T cell infiltration and interferon responses4Epicardial fat drives macrophage response in atrial cardiomyopathy4Spatial transcriptomics profiling of NDMA-induced liver injury in Mgmt-deficient mice across sex and time4Spatial transcriptomic landscape of protein-coding genes in descended and undescended testes of dogs with unilateral cryptorchidism4A skin–kidney neutrophil axis links UV exposure to renal angiogenesis and tissue remodeling in healthy and lupus kidneys. [Spatial Transcriptomics]4Targeting JAK1/3-STAT1 signaling attenuates cytotoxic T lymphocytes activation for the treatment in Stevens-Johnson syndrome and toxic epidermal necrolysis4Integrated bulk and spatial transcriptomic analysis identifies progression-associated molecular signatures in biopsy-proven hypertensive nephropathy [Spatial Transcriptomics]4Regional differential gene expression analyses of brains from four 24w-old Nf1+- mice4Spatial transcriptomics reveals microenvironmental heterogeneity in osteoarthritic subchondral bone4A single-nucleus and spatial transcriptomic atlas of the Syrian hamster preoptic area across hibernation states4A new epithelial cell subpopulation predicts response to surgery, chemotherapy, and immunotherapy in bladder cancer4High resolution mapping of erythroid niches in human using subcellular spatial transcriptomics310x-mouse-bone-data-with-custom-add-on-panel-1-standard310x-human-bone-and-bone-marrow-data-with-custom-add-on-panel-1-standard3A cellular hierarchy in melanoma uncouples growth and metastasis3Spatial RNA sequencing of regenerating mouse hindlimb muscle3The spatial landscape of gene expression isoforms in tissue sections3Cardiac reprogramming and Gata4 overexpression reduce fibrosis and improve diastolic dysfunction in heart failure with preserved ejection fraction [Visium]3Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces3ETMR stem-like state and chemo-resistance are supported by perivascular cells at single-cell resolution (spatial transcriptomics subset)3Spatial transcriptome gene expression profile in 2 patients with Hashimoto's thyroiditis and 2 patients with papillary thyroid cancer combined with Hashimoto's thyroiditis.3Spatial Transcriptomic profiling of day2 wounds and intact tissues of Hgfac WT and KO mice3Spatial transcriptomics of primary human hepatoblastomas3Mouse uterine gene expressions during peri-implantation period3snPATHO-seq: unlocking the FFPE archives for single nucleus RNA profiling [Visium]3Specific oncogenic drivers differently shaped the composition and functional diversity of immune cells in the microenvironment of experimental gliomas3Delineation of a thrombin receptor-stimulated vascular smooth muscle cell transition to a plaque-stabilising fibrous cap-associated state3Spatial transcriptomics for platinum-resistant high-grade serous ovarian carcinoma3Spatial transcriptomical analysis of livers from patients with COVID193Spatially-restricted and ontogenically-distinct hepatic macrophages are required for tissue repair.3Multi-Omic Single-Cell Dissection of Leukemic T-Cell Lymphoma Following CAR T-Cell Therapy [Spatial Transcriptomics]3Multi-omics analysis identifies erythroid cells as the major population in mouse placentas expressing the MHC class II antigen presentation, chemokine, and antibacterial immune response genes [Spatial Transcriptomics]3Intratumoral spatiotemporal heterogeneity of HPV status in HPV-associated oropharyngeal squamous cell carcinoma with clinical record3Hypoxia shapes both therapeutic response and resistance in metastatic clear cell renal cell carcinoma [Spatial Transcriptomics]3Region- and cell type-specific changes in gene expression in the cerebellum after classical fear conditioning [Spatial Transcriptomics]3Profiling the Microenvironment in Tuberous Sclerosis Complex-Associated Angiomyolipoma: Insights from Spatial Gene Expression Analysis3High resolution spatial trancrioptomics combined with deep learning-based image segmentation enables single-cell spatial profiling of archival FFPE kidney tissue from patients with idiopathic nephrotic syndrome3Spatial transcriptomics reveals injury-responsive compartments and coordinated immune–fibrotic signaling in ANCA-associated renal vasculitis3Integrated Spatial Transcriptomics and Single-Cell RNA Sequencing Reveal Lars2-Mediated Spatiotemporal Dynamics of Myocardial Remodeling in a Mouse Model of Transverse Aortic Constriction (TAC)3High-resolution spatial transcriptomics of human liver with VisiumHD3Spatial transcriptomics of MRGPRX4-driven melanoma3Spatially resolved gene expression and tumour-microenvironment interactions across malignant transformation in IDH-mutant glioma3Vascular STING activation facilitates NK cell anti-tumor immunity in small cell lung cancer [Spatial_Transcriptome]3Inflammatory immune modulators of AML lung infiltration and respiratory failure3Polarized neocortical organoids with areal signatures upon the formation of anterior and posterior organizers. [Spatial Transcriptomics]3Integration of spatial and single cell transcriptomics localizes epithelial-immune cross-talk in kidney injury3Mapping the Tissue Architecture and Endothelial-PEC Network in Hepatic Angiomyolipoma Using Single-cell and Spatial Transcriptomics [Spatial Transcriptomics]3Morphological and Functional Diversity of Spatially Resolved Vestibular Ganglion Neuron Cell Types2Immune Dynamics in Palmoplantar Pustulosis Unveiled by Single-Cell and High-Resolution Spatial Transcriptomics [Spatial Transcriptomics]2Gain-of-function ENL YEATS domain mutations impede nephrogenesis through gene expression control [Spatial Transcriptomics]2Inference of cell-cell communication in human fetal liver from high definition spatial profiling using Renoir2figshare-251235382bia-s-biad8592bia-s-biad2491210x-xenium-human-lung-cancer-post-xenium-technote210x-xenium-comparison-fresh-frozen-human-ovarian-cancer210x-human-skin-data-xenium-human-multi-tissue-and-cancer-panel-1-standard210x-human-kidney-preview-data-xenium-human-multi-tissue-and-cancer-panel-1-standard210x-human-tonsil-data-xenium-human-multi-tissue-and-cancer-panel-1-standard210x-human-colon-preview-data-xenium-human-colon-gene-expression-panel-1-standard210x-human-liver-data-xenium-human-multi-tissue-and-cancer-panel-1-standard2Batf3-dendritic cells and 4-1BB-4-1BB ligand axis are required at the effector phase within the tumor microenvironment for PD-1-PD-L1 blockade efficacy210X Visium Spatial transcriptomics of murine colon in steady state and during recovery after DSS colitis2A single-cell transcriptomic analysis of endometriosis2Identification of TREM1+CD163+ myeloid cells as a deleterious immune subset in HCC [Spatial Transcriptomics]2Distinct mesenchymal cell states mediate prostate cancer progression [Spatial Transcriptomics]2Single-nucleus Ribonucleic Acid-sequencing and Spatial Transcriptomics Reveal the Cardioprotection of Shexiang Baoxin Pill (MUSKARDIA) in Mice with Myocardial Ischemia-Reperfusion Injury2Spotiphy: generative modeling in single-cell spatial whole transcriptomics210X Visium Spatial transcriptomics of murine colon in steady state and during recovery after DSS colitis2Cell type inference in human lung tissue by domain adaptation of single-cell and spatial transcriptomic data2Epithelial Plasticity and Innate Immune Activation Promote Lung Tissue Remodeling following Respiratory Viral Infection.2Spatial transcriptome sequencing of primary nasopharyngeal carcinoma tissues2Interleukin 7 therapy changes tumor immune environment to pro-inflammatory through myeloid and T cell interactions [Visium]2A cellular hierarchy in melanoma uncouples growth and metastasis2Fragment-sequencing unveils local tissue microenvironments at single cell resolution2Spatial transcriptomic analysis of a pre-clinical NF1 pseudarthrosis fracture model2Reconstruction of 3-dimensional tissue organization at the single-cell resolution [ST]2Visium spatial gene expression analyses of ovarian clear cell carcinoma (OCCC) [visium OCCC]2Shared inflammatory glial cell signature after brain injury, revealed by spatial, temporal and cell-type-specific profiling of the murine cerebral cortex [spatial transcriptomics]2Spatial Transcriptomics of Brains Infected with VEEV2Human and Murine Kidneys Contain Transcriptionally and Spatially Orthologous Resident Macrophage Subpopulations in Acute Kidney Injury2Human Cortical Kidney Sections2Synovial Th17 transdifferentiation into exTh17 sustains chronic IL-17-independent inflammatory arthritis [Visium]2Pharmacological targeting Netrin-1 inhibits EMT in cancer [Visium]2Spatiotemporal trajectory analysis and validation of microglia activation in traumatic brain injury2Age-related epithelial defects limit thymic function and regeneration [visium]2Spatial Transcriptomics reveals that cells that experience intratumoral hypoxia retain hypoxia-associated transcriptional programs after invading into oxygenated tumor regions.2A Proteomic Atlas of Atherosclerosis: The Contribution of Proteoglycans to Sex Differences, Plaque Phenotypes and Outcomes2Clonal proliferation of smooth muscle cell in human atherosclerosis2Spatial transcriptomics reveal signatures of histopathological changes in muscular sarcoidosis2Identification of TREM1+CD163+ myeloid cells as a deleterious immune subset in HCC [Spatial Transcriptomics]2Spatial transcriptomics to dissect molecular signature of cardiac fibroblasts in experimental autoimmune myocarditis2Double-negative B cells and DNASE1L3 colocalise with microbiota in gut-associated lymphoid tissue2High-resolution analysis of mononuclear phagocytes reveals clinically relevant markers in human colo-rectal liver metastasis - Visium Spatial Transcriptomics2Spatial transcriptomics reveals C10 tumor transcriptomic changes generated by Smarta cell transfer2Glycolysis in hepatic stellate cells coordinates fibrogenic extracellular vesicle release in a spatial manner to amplify liver fibrosis2Germinal Center Dark Zone harbors ATR-dependent determinants of T-cell exclusion that are also identified in aggressive lymphoma – Visium_FFPE_Spatial_Trasciptomics_project2Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity [Visium]2Spatial transcriptome analysis for placental tissue of preeclampsia2spatialGE is a User-Friendly Web Application that Facilitates Spatial Transcriptomics Data Analysis2Spatial Transcriptomics of Lungs Infected with Coccidioides posadasii2Creeping fat-derived mechanosensitive fibroblasts drive intestinal fibrosis in Crohn’s disease strictures [Visium]2Distinct Myeloid Derived Suppressor Cell Populations in Human Glioblastoma210X Visium Spatial transcriptomics of small intestine from mice fed stearic acid-rich high fat diet (HFD)2A blueprint for local and distal glioblastoma invasion programs2Spatial transcriptomic profiling of the lung tissues from a patient with recurrent anti-synthetase syndrome associated interstitial lung disease after bilateral lung transplantation and one untreated patient2Glioma-neuronal circuit remodeling induces regional immunosuppression [visium]2Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [VisiumHD]2Salivary gland transcriptomic analysis in the IL-14α transgenic mouse model of Sjögren’s disease using Visium V1 3' spatial gene expression assay2Polyamines regulate adaptive antitumor immunity by functional specialization of regulatory T cells [Visium]2Targeting circulating mechanoresponsive monocytes and macrophages to reduce fibrosis2Integrating spatial and single-cell transcriptomics to characterize mouse long bone fracture healing process2Spatial transcriptomics of Atg7 knockout mice reveals ATG7’s role in antimicrobial immunity against nontuberculous mycobacteria2IL-17A Neutralization Prevents Immune Checkpoint Inhibitor-Associated Myocarditis and Synergistically Enhances Immune Checkpoint Blockade Therapy2Immunosuppressive tumor microenvironment of osteosarcoma [Spatial transcriptomics]2Subclinical Neonatal HSV-1 Infection Triggers Immune Responses and Modulates Neurological Pathways Leading to Long-Term Sequelae [Visium]2A novel CAF population coordinates hyper-suppressive regulatory T cell recruitment and localization in lung cancer [Spatial Transcriptomics]2Genetic deletion of Usp22 in KRASG12D-p53-null driven mouse lung cancer [Visium]2Integrated single-cell and spatial transcriptomics of ovarian immune landscape reveal role of distinct macrophages in classic galactosemia associated with premature ovarian insufficiency2A targetable developmental program co-regulates angiogenesis and immune evasion [Spatial Transcriptomics]2Spatially-guided metabolomics profiling of heterogeneous human tumor tissues2Targeting the lipid metabolism proteins FASN and GPAM in alveolar type II cells decreases lung metastasis2Spatial transcriptomic profiling of TOP2B-driven anthracycline-induced cardiotoxicity in mouse hearts2High-resolution and noninvasive profiling of the tumor microenvironment with spatial ecotypes [Visium]2Spatial transcriptomic analysis of human iPSC-derived hemanoids at day 16 and day 282Interleukin-34 induced Arg1+ macrophages play a key role in breast cancer brain metastasis2Spatial transcriptomic analysis of patient- and cell line-derived high grade serous ovarian cancer spheroids2MALADAPTIVE IMMUNE-FIBROTIC AXIS DRIVES IMPAIRED LONG BONE REGENERATION UNDER MECHANICAL INSTABILITY2Ultrasound-Mediated BBB Opening Promotes Microglial Reprogramming and Enhanced Endothelial Interactions in the Human Peritumoral Brain [Visium]2YAP Drives Assembly of a Spatially Colocalized Cellular Triad Required for Heart Renewal2Xenium spatial transcriptomics identifies mesenchymal fibroblast expansion and conserved fibrotic ECM programs in keloid210X Visium Spatial transcriptomics of murine colon at d14 (mucosa healing) in B cell sufficient-deficient mice2geo-gse334924-camr-kidney1geo-gse2609261geo-gse345644110x-ffpe-human-brain-cancer-human-immuno-oncology-profiling-panel-custom-add-on110x-preview-ffpe-human-lung-cancer-xenium-multimodal-cell-segmentation110x-ffpe-human-pancreas-with-xenium-multimodal-cell-segmentation110x-fresh-frozen-mouse-colon-xenium-multimodal-cell-segmentation1

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