Visium HD
Human bone element
GSM9556004
silver Interactive viewer H&E Ewing sarcoma No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9556004_033_post_hires_image': DataArray[cyx] (3, 1906, 6000)
│ └── 'GSM9556004_033_post_lowres_image': DataArray[cyx] (3, 191, 600)
├── Shapes
│ ├── 'GSM9556004_033_post_square_008um': GeoDataFrame shape: (13627, 1) (2D shapes)
│ └── 'GSM9556004_033_post_square_008um_for_vitessce': GeoDataFrame shape: (13627, 2) (2D shapes)
└── Tables
└── 'square_008um': AnnData (13627, 18085)
with coordinate systems:
▸ 'GSM9556004_033_post', with elements:
GSM9556004_033_post_hires_image (Images), GSM9556004_033_post_lowres_image (Images), GSM9556004_033_post_square_008um (Shapes), GSM9556004_033_post_square_008um_for_vitessce (Shapes)
▸ 'GSM9556004_033_post_downscaled_hires', with elements:
GSM9556004_033_post_hires_image (Images), GSM9556004_033_post_square_008um (Shapes), GSM9556004_033_post_square_008um_for_vitessce (Shapes)
▸ 'GSM9556004_033_post_downscaled_lowres', with elements:
GSM9556004_033_post_lowres_image (Images), GSM9556004_033_post_square_008um (Shapes), GSM9556004_033_post_square_008um_for_vitessce (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("xVK6T0rajFTgOKci") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/xVK6T0rajFTgOKci
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid xVK6T0rajFTgOKci Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["xVK6T0rajFTgOKci0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- Visium HD
- Organism
- human
- Tissue
- bone element
- Condition
- Ewing sarcoma
- Modality
- RNA
- Observations
- 13,627
- Tier
- silver
- Resolution
- 6,000 × 1,906 px
- mpp
- 2.496 µm/px
- Size
- 9.0 MB
- Sample ID
- GSM9556004
- License
- unknown
- Published
- Mar 2, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB