10x Xenium
Mouse spinal cord
GSM9829816
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataArray[cyx] (1, 88375, 54147)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (88348, 54056), (44174, 27028), (22087, 13514), (11043, 6757), (5521, 3378)
│ └── 'nucleus_labels': DataTree[yx] (88339, 54032), (44169, 27016), (22084, 13508), (11042, 6754), (5521, 3377)
├── Points
│ └── 'transcripts': DataFrame with shape: (55219732, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (167694, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (167694, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (166789, 2) (2D shapes)
└── Tables
└── 'table': AnnData (167694, 347)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("OSUz9MxSbGOAWAZ9") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/OSUz9MxSbGOAWAZ9
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid OSUz9MxSbGOAWAZ9 Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["OSUz9MxSbGOAWAZ90000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis→ 10 datasets · comparison
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- spinal cord
- Modality
- RNA
- Observations
- 167,694
- Transcripts
- 55,219,732
- Tier
- silver
- Size
- 3.7 GB
- Sample ID
- GSM9829816
- License
- NCBI GEO policy
- Published
- Jul 28, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB