Visium
Human amygdala
GSM9937047
silver Interactive viewer H&E No linked publication
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9937047_Br8325-V13M06-387_B1_full_image': DataTree[cyx] (3, 24842, 25201), (3, 12421, 12600), (3, 6210, 6300), (3, 3105, 3150), (3, 1552, 1575)
│ ├── 'GSM9937047_Br8325-V13M06-387_B1_hires_image': DataArray[cyx] (3, 1972, 2000)
│ └── 'GSM9937047_Br8325-V13M06-387_B1_lowres_image': DataArray[cyx] (3, 592, 600)
├── Shapes
│ └── 'GSM9937047_Br8325-V13M06-387_B1': GeoDataFrame shape: (4992, 2) (2D shapes)
└── Tables
└── 'table': AnnData (4992, 36601)
with coordinate systems:
▸ 'GSM9937047_Br8325-V13M06-387_B1', with elements:
GSM9937047_Br8325-V13M06-387_B1_full_image (Images), GSM9937047_Br8325-V13M06-387_B1_hires_image (Images), GSM9937047_Br8325-V13M06-387_B1_lowres_image (Images), GSM9937047_Br8325-V13M06-387_B1 (Shapes)
▸ 'GSM9937047_Br8325-V13M06-387_B1_downscaled_hires', with elements:
GSM9937047_Br8325-V13M06-387_B1_hires_image (Images), GSM9937047_Br8325-V13M06-387_B1 (Shapes)
▸ 'GSM9937047_Br8325-V13M06-387_B1_downscaled_lowres', with elements:
GSM9937047_Br8325-V13M06-387_B1_lowres_image (Images), GSM9937047_Br8325-V13M06-387_B1 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("5FKHCHDiqW56K2Ji") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/5FKHCHDiqW56K2Ji
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 5FKHCHDiqW56K2Ji Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["5FKHCHDiqW56K2Ji0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium]→ 48 datasets · replicates
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- amygdala
- Modality
- RNA
- Observations
- 4,992
- Tier
- silver
- Chemistry
- Visium v1
- Magnification
- 20x
- Resolution
- 25,201 × 24,842 px
- mpp
- 0.305 µm/px
- Size
- 1.5 GB
- Sample ID
- GSM9937047
- License
- unknown
- Published
- Aug 24, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB