Visium
Rat brain
GSM9078939
bronze H&E temporal lobe epilepsy Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9078939_C_L2_S7_hires_image': DataArray[cyx] (3, 2000, 1979)
│ └── 'GSM9078939_C_L2_S7_lowres_image': DataArray[cyx] (3, 600, 594)
├── Shapes
│ └── 'GSM9078939_C_L2_S7': GeoDataFrame shape: (2907, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2907, 35236)
with coordinate systems:
▸ 'GSM9078939_C_L2_S7', with elements:
GSM9078939_C_L2_S7_hires_image (Images), GSM9078939_C_L2_S7_lowres_image (Images), GSM9078939_C_L2_S7 (Shapes)
▸ 'GSM9078939_C_L2_S7_downscaled_hires', with elements:
GSM9078939_C_L2_S7_hires_image (Images), GSM9078939_C_L2_S7 (Shapes)
▸ 'GSM9078939_C_L2_S7_downscaled_lowres', with elements:
GSM9078939_C_L2_S7_lowres_image (Images), GSM9078939_C_L2_S7 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("c65GeySNyMKdgDgZ") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/c65GeySNyMKdgDgZ
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid c65GeySNyMKdgDgZ Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["c65GeySNyMKdgDgZ0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus→ 16 datasets · time course
Metadata
- Technology
- Visium
- Organism
- rat
- Tissue
- brain
- Condition
- temporal lobe epilepsy
- Modality
- RNA
- Observations
- 2,907
- Tier
- bronze
- Chemistry
- Visium v1
- Resolution
- 1,979 × 2,000 px
- mpp
- 3.281 µm/px
- Size
- 47 MB
- Sample ID
- GSM9078939
- License
- unknown
- Published
- Feb 18, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB