Visium
Mouse submandibular gland
GSM9026037
bronze Interactive viewer H&E Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9026037_C57_hires_image': DataArray[cyx] (3, 1990, 2000)
│ └── 'GSM9026037_C57_lowres_image': DataArray[cyx] (3, 597, 600)
├── Shapes
│ └── 'GSM9026037_C57': GeoDataFrame shape: (1849, 2) (2D shapes)
└── Tables
└── 'table': AnnData (1849, 56748)
with coordinate systems:
▸ 'GSM9026037_C57', with elements:
GSM9026037_C57_hires_image (Images), GSM9026037_C57_lowres_image (Images), GSM9026037_C57 (Shapes)
▸ 'GSM9026037_C57_downscaled_hires', with elements:
GSM9026037_C57_hires_image (Images), GSM9026037_C57 (Shapes)
▸ 'GSM9026037_C57_downscaled_lowres', with elements:
GSM9026037_C57_lowres_image (Images), GSM9026037_C57 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("72RjYzAXUCFU4yA5") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/72RjYzAXUCFU4yA5
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 72RjYzAXUCFU4yA5 Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["72RjYzAXUCFU4yA50000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Salivary gland transcriptomic analysis in the IL-14α transgenic mouse model of Sjögren’s disease using Visium V1 3' spatial gene expression assay→ 2 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- submandibular gland
- Modality
- RNA
- Observations
- 1,849
- Tier
- bronze
- Chemistry
- Visium v1
- Magnification
- other
- Resolution
- 2,000 × 1,990 px
- mpp
- 3.449 µm/px
- Size
- 24 MB
- Sample ID
- GSM9026037
- License
- unknown
- Published
- Jul 8, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB