10x Xenium
Mouse skin of body
GSM8941358
bronze Interactive viewer Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 61154, 42639), (1, 30577, 21319), (1, 15288, 10659), (1, 7644, 5329), (1, 3822, 2664)
├── Labels
│ └── 'nucleus_labels': DataTree[yx] (57077, 41574), (28538, 20787), (14269, 10393), (7134, 5196), (3567, 2598)
├── Points
│ └── 'transcripts': DataFrame with shape: (3679368, 11) (3D points)
├── Shapes
│ ├── 'cell_circles': GeoDataFrame shape: (52308, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (52308, 2) (2D shapes)
└── Tables
└── 'table': AnnData (52308, 480)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), nucleus_labels (Labels), transcripts (Points), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("2EeiFnt8iEjSjQGL") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/2EeiFnt8iEjSjQGL
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 2EeiFnt8iEjSjQGL Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["2EeiFnt8iEjSjQGL0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- skin of body
- Modality
- RNA
- Observations
- 52,308
- Transcripts
- 3,679,368
- Tier
- bronze
- Size
- 1013 MB
- Sample ID
- GSM8941358
- License
- unknown
- Published
- Jun 4, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB