Visium
Human prostate gland
INT25
silver Interactive viewer H&E prostate adenocarcinoma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'INT25_full_image': DataTree[cyx] (3, 13998, 14315), (3, 6999, 7157), (3, 3499, 3578), (3, 1749, 1789)
├── Shapes
│ └── 'INT25_spots': GeoDataFrame shape: (3808, 2) (2D shapes)
└── Tables
└── 'table': AnnData (3808, 17943)
with coordinate systems:
▸ 'global', with elements:
INT25_full_image (Images), INT25_spots (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("55eNpT0Voz1abBwQ") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/55eNpT0Voz1abBwQ
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 55eNpT0Voz1abBwQ Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["55eNpT0Voz1abBwQ0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- Visium
- Organism
- human
- Tissue
- prostate gland
- Condition
- prostate adenocarcinoma
- Modality
- RNA
- Observations
- 3,808
- Tier
- silver
- Chemistry
- Visium v1
- Resolution
- 14,315 × 13,998 px
- mpp
- 0.616 µm/px
- Size
- 522 MB
- Sample ID
- INT25
- License
- CC BY-NC-SA 4.0 NonCommercial
Cite this dataset
No linked publication found — please cite the data source.
License: CC BY-NC-SA 4.0 ↗ · Reprocessed to SpatialData by SpatialData-DB