10x Xenium
Human skin of body
GSM9902815
silver Interactive viewer keloid No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 71405, 39835), (1, 35702, 19917), (1, 17851, 9958), (1, 8925, 4979), (1, 4462, 2489)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (69807, 38249), (34903, 19124), (17451, 9562), (8725, 4781), (4362, 2390)
│ └── 'nucleus_labels': DataTree[yx] (69779, 38227), (34889, 19113), (17444, 9556), (8722, 4778), (4361, 2389)
├── Points
│ └── 'transcripts': DataFrame with shape: (12574515, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (64091, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (64091, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (64615, 2) (2D shapes)
└── Tables
└── 'table': AnnData (64091, 360)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("zJI63TcbTlkIJsKY") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/zJI63TcbTlkIJsKY
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid zJI63TcbTlkIJsKY Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["zJI63TcbTlkIJsKY0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Xenium spatial transcriptomics identifies mesenchymal fibroblast expansion and conserved fibrotic ECM programs in keloid→ 2 datasets · comparison
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- skin of body
- Condition
- keloid
- Modality
- RNA
- Observations
- 64,091
- Transcripts
- 12,574,515
- Tier
- silver
- Size
- 1.5 GB
- Sample ID
- GSM9902815
- License
- unknown
- Published
- Jul 24, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB