Visium
Human coronary artery
GSM9414347
bronze Interactive viewer H&E atherosclerosis Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9414347_T1099R_hires_image': DataArray[cyx] (3, 1951, 2000)
│ └── 'GSM9414347_T1099R_lowres_image': DataArray[cyx] (3, 585, 600)
├── Shapes
│ └── 'GSM9414347_T1099R': GeoDataFrame shape: (2205, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2205, 17943)
with coordinate systems:
▸ 'GSM9414347_T1099R', with elements:
GSM9414347_T1099R_hires_image (Images), GSM9414347_T1099R_lowres_image (Images), GSM9414347_T1099R (Shapes)
▸ 'GSM9414347_T1099R_downscaled_hires', with elements:
GSM9414347_T1099R_hires_image (Images), GSM9414347_T1099R (Shapes)
▸ 'GSM9414347_T1099R_downscaled_lowres', with elements:
GSM9414347_T1099R_lowres_image (Images), GSM9414347_T1099R (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("R8ga9TkGM4JZFldX") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/R8ga9TkGM4JZFldX
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid R8ga9TkGM4JZFldX Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["R8ga9TkGM4JZFldX0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Visium]→ 16 datasets · other
Metadata
- Technology
- Visium
- Organism
- human
- Tissue
- coronary artery
- Condition
- atherosclerosis
- Modality
- RNA
- Observations
- 2,205
- Tier
- bronze
- Chemistry
- Visium v1
- Magnification
- other
- Resolution
- 2,000 × 1,951 px
- mpp
- 3.752 µm/px
- Size
- 9.5 MB
- Sample ID
- GSM9414347
- License
- unknown
- Published
- Feb 2, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB