10x Xenium
Human vestibulocochlear nerve
GSM10013108
silver Interactive viewer acoustic neuroma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 40884, 39807), (1, 20442, 19903), (1, 10221, 9951), (1, 5110, 4975), (1, 2555, 2487)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (39819, 38625), (19909, 19312), (9954, 9656), (4977, 4828), (2488, 2414)
│ └── 'nucleus_labels': DataTree[yx] (39789, 38599), (19894, 19299), (9947, 9649), (4973, 4824), (2486, 2412)
├── Points
│ └── 'transcripts': DataFrame with shape: (31318189, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (152502, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (152502, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (152466, 2) (2D shapes)
└── Tables
└── 'table': AnnData (152502, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("z8KssbRLDz94lgY7") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/z8KssbRLDz94lgY7
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid z8KssbRLDz94lgY7 Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["z8KssbRLDz94lgY70000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- vestibulocochlear nerve
- Condition
- acoustic neuroma
- Modality
- RNA
- Observations
- 152,502
- Transcripts
- 31,318,189
- Tier
- silver
- Size
- 2.0 GB
- Sample ID
- GSM10013108
- License
- unknown
- Published
- Sep 25, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB