Visium
Mouse skin of body
GSM8974359
bronze H&E melanoma Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM8974359_KO_hires_image': DataArray[cyx] (3, 2000, 1718)
│ └── 'GSM8974359_KO_lowres_image': DataArray[cyx] (3, 600, 516)
├── Shapes
│ └── 'GSM8974359_KO': GeoDataFrame shape: (2746, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2746, 19465)
with coordinate systems:
▸ 'GSM8974359_KO', with elements:
GSM8974359_KO_hires_image (Images), GSM8974359_KO_lowres_image (Images), GSM8974359_KO (Shapes)
▸ 'GSM8974359_KO_downscaled_hires', with elements:
GSM8974359_KO_hires_image (Images), GSM8974359_KO (Shapes)
▸ 'GSM8974359_KO_downscaled_lowres', with elements:
GSM8974359_KO_lowres_image (Images), GSM8974359_KO (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("cVpYVRp2S1jQ9VsZ") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/cVpYVRp2S1jQ9VsZ
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid cVpYVRp2S1jQ9VsZ Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["cVpYVRp2S1jQ9VsZ0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Polyamines regulate adaptive antitumor immunity by functional specialization of regulatory T cells [Visium]→ 2 datasets · comparison
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- skin of body
- Condition
- melanoma
- Modality
- RNA
- Observations
- 2,746
- Tier
- bronze
- Chemistry
- Visium CytAssist v2
- Resolution
- 1,718 × 2,000 px
- mpp
- 3.359 µm/px
- Size
- 57 MB
- Sample ID
- GSM8974359
- License
- unknown
- Published
- Jul 30, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB