10x Xenium
Human vestibulocochlear nerve
GSM10013107
silver Interactive viewer acoustic neuroma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 44298, 25703), (1, 22149, 12851), (1, 11074, 6425), (1, 5537, 3212), (1, 2768, 1606)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (43130, 25537), (21565, 12768), (10782, 6384), (5391, 3192), (2695, 1596)
│ └── 'nucleus_labels': DataTree[yx] (40031, 25394), (20015, 12697), (10007, 6348), (5003, 3174), (2501, 1587)
├── Points
│ └── 'transcripts': DataFrame with shape: (23538211, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (148575, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (148575, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (148499, 2) (2D shapes)
└── Tables
└── 'table': AnnData (148575, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("AsJvpQpvQtaeZnJ3") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/AsJvpQpvQtaeZnJ3
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid AsJvpQpvQtaeZnJ3 Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["AsJvpQpvQtaeZnJ30000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- vestibulocochlear nerve
- Condition
- acoustic neuroma
- Modality
- RNA
- Observations
- 148,575
- Transcripts
- 23,538,211
- Tier
- silver
- Size
- 1.7 GB
- Sample ID
- GSM10013107
- License
- unknown
- Published
- Sep 25, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB