Visium
Mouse bone tissue
GSM9564258
bronze Interactive viewer H&E lung carcinoma Provisional
print(sdata)
SpatialData object
├── Images
│ ├── 'GSM9564258_Bone_ST_24667_hires_image': DataArray[cyx] (3, 2000, 1865)
│ └── 'GSM9564258_Bone_ST_24667_lowres_image': DataArray[cyx] (3, 600, 560)
├── Shapes
│ └── 'GSM9564258_Bone_ST_24667': GeoDataFrame shape: (2153, 2) (2D shapes)
└── Tables
└── 'table': AnnData (2153, 32285)
with coordinate systems:
▸ 'GSM9564258_Bone_ST_24667', with elements:
GSM9564258_Bone_ST_24667_hires_image (Images), GSM9564258_Bone_ST_24667_lowres_image (Images), GSM9564258_Bone_ST_24667 (Shapes)
▸ 'GSM9564258_Bone_ST_24667_downscaled_hires', with elements:
GSM9564258_Bone_ST_24667_hires_image (Images), GSM9564258_Bone_ST_24667 (Shapes)
▸ 'GSM9564258_Bone_ST_24667_downscaled_lowres', with elements:
GSM9564258_Bone_ST_24667_lowres_image (Images), GSM9564258_Bone_ST_24667 (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("4x2FaJBWCBSjtaxk") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/4x2FaJBWCBSjtaxk
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 4x2FaJBWCBSjtaxk Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["4x2FaJBWCBSjtaxk0001"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openPart of collection
Single-cell and Spatial Transcriptomic Profiling of the Bone Metastatic Microenvironment→ 4 datasets · other
Metadata
- Technology
- Visium
- Organism
- mouse
- Tissue
- bone tissue
- Condition
- lung carcinoma
- Modality
- RNA
- Observations
- 2,153
- Tier
- bronze
- Chemistry
- Visium v1
- Resolution
- 1,865 × 2,000 px
- mpp
- 3.921 µm/px
- Size
- 25 MB
- Sample ID
- GSM9564258
- License
- unknown
- Published
- Mar 11, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB