10x Xenium
Ambystoma mexicanum limb
GSM8900422
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Points
│ └── 'transcripts': DataFrame with shape: (20356006, 11) (3D points)
├── Shapes
│ └── 'cell_circles': GeoDataFrame shape: (64426, 2) (2D shapes)
└── Tables
└── 'table': AnnData (64426, 100)
with coordinate systems:
▸ 'global', with elements:
transcripts (Points), cell_circles (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("9gRvKusRy0xjLWFT") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/9gRvKusRy0xjLWFT
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 9gRvKusRy0xjLWFT Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["9gRvKusRy0xjLWFT0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- ambystoma mexicanum
- Tissue
- limb
- Modality
- RNA
- Observations
- 64,426
- Transcripts
- 20,356,006
- Tier
- silver
- Size
- 578 MB
- Sample ID
- GSM8900422
- License
- unknown
- Published
- Apr 16, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB