10x Xenium
Leucoraja erinaceus trunk
GSM9901430
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 101914, 17412), (1, 50957, 8706), (1, 25478, 4353), (1, 12739, 2176), (1, 6369, 1088)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (101872, 17327), (50936, 8663), (25468, 4331), (12734, 2165), (6367, 1082)
│ └── 'nucleus_labels': DataTree[yx] (101846, 17319), (50923, 8659), (25461, 4329), (12730, 2164), (6365, 1082)
├── Points
│ └── 'transcripts': DataFrame with shape: (27624104, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (190499, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (190499, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (190839, 2) (2D shapes)
└── Tables
└── 'table': AnnData (190499, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Load in Python
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("zolOQrzabnstfqQO") # latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Load from the CLI
# one-shot: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/zolOQrzabnstfqQO
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid zolOQrzabnstfqQO Load with the Python client
# pip install git+https://github.com/theislab/spatialdata-db-client
from sddb import Catalog
ds = Catalog().cohort(uids=["zolOQrzabnstfqQO0000"])[0]
ds.elements() # inspect without downloading
sdata = ds.load(lazy=False) # copy to the local cache and openMetadata
- Technology
- 10x Xenium
- Organism
- leucoraja erinaceus
- Tissue
- trunk
- Modality
- RNA
- Observations
- 190,499
- Transcripts
- 27,624,104
- Tier
- silver
- Size
- 1.7 GB
- Sample ID
- GSM9901430
- License
- unknown
- Published
- Jul 28, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · Reprocessed to SpatialData by SpatialData-DB